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AT4G27390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXQGeggNOG:ENOG4111Z8BEMBL:AF386939EMBL:AY037265EMBL:AY052205EMBL:AY060494EMBL:CP002687
EnsemblPlants:AT4G27390EnsemblPlants:AT4G27390.1entrez:828847GeneID:828847GO:GO:0016021Gramene:AT4G27390.1hmmpanther:PTHR36785
hmmpanther:PTHR36785:SF1HOGENOM:HOG000151142KEGG:ath:AT4G27390OMA:DKFVKEPPhylomeDB:Q93VI9Proteomes:UP000006548RefSeq:NP_567772.1
STRING:3702.AT4G27390.1TAIR:AT4G27390TMHMM:TMhelixUniGene:At.2347UniGene:At.23474UniProt:Q93VI9
Coordinates (TAIR10) chr4:-:13703417..13704655
Molecular Weight (calculated) 25928.50 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.06
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MASIPQIILC NFSIHDGFNK EPSNRLHAKR RSLAPSMLQT KLGLRACLIE HRQRQRVMGL GDIGMLASEK SLNRKRRVVR VRGLKFNGGD NNGNGRILGN
101: LALAIGLTYL SMTGQLGWIL DAIVSVWLIV VIVPILGLGA FFWWAQRDIV QSNCPNCGNE FQIFKSAMDD EVQLCPFCTQ PFSVVDDKFV KEPVKFSNQT
201: TAFGQDLNGF SSKPKKGKGS STAVVDIEAE VTDAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)