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AT4G27320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Adenine nucleotide alpha hydrolases-like superfamily protein
Curator
Summary (TAIR10)
Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.
Computational
Description (TAIR10)
PHOS34; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT5G54430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AK175197EMBL:AK175342EMBL:AK175411EMBL:AK175423EMBL:AK176431EMBL:AK176530EMBL:AK176789
EMBL:AK176877EMBL:AY084304EMBL:AY123998EMBL:AY143840EMBL:CP002687EnsemblPlants:AT4G27320EnsemblPlants:AT4G27320.1
entrez:828840Gene3D:3.40.50.620GeneID:828840GO:GO:0002238GO:GO:0006950Gramene:AT4G27320.1hmmpanther:PTHR31966
hmmpanther:PTHR31966:SF5InterPro:IPR006015InterPro:IPR006016InterPro:IPR014729KEGG:ath:AT4G27320OMA:PHLPNIKPfam:PF00582
PRINTS:PR01438Proteomes:UP000006548RefSeq:NP_567770.1STRING:3702.AT4G27320.1SUPFAM:SSF52402TAIR:AT4G27320tair10-symbols:ATPHOS34
tair10-symbols:PHOS34UniGene:At.24337UniProt:Q8L4N1
Coordinates (TAIR10) chr4:-:13678860..13680717
Molecular Weight (calculated) 28107.60 Da
IEP (calculated) 6.22
GRAVY (calculated) -0.59
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPDSDYPHL PNIKIHHPSS PRHSHHHSSS TPSAATPTPT AGARRKIGVA VDLSEESAFA VRWAVDHYIR PGDAVVILHV SPTSVLFGAD WGPLPLQTPP
101: PPSAATDPGA QPKPSQEDFD AFTSSKVADL AKPLKEAGFP HKIHIVKDHD MRERLCLETE RLNLSAVIMG SRGFGAEKRG SDGKLGSVSD YCVHHCVCPV
201: VVVRYPDDRD GPAPPGNVGA TREAIVTVKS RRDDDDDDDE DHEAKIAAAA SDHHEHIKDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)