suba logo
AT4G27230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone H2A 2
Curator
Summary (TAIR10)
Encodes HTA2, a histone H2A protein.
Computational
Description (TAIR10)
histone H2A 2 (HTA2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G54640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5262eggNOG:KOG1756EMBL:AK228409EnsemblPlants:AT4G27230
EnsemblPlants:AT4G27230.1EnsemblPlants:AT4G27230.2entrez:828831ExpressionAtlas:Q0WRA6
Gene3D:1.10.20.10GeneID:828831GO:GO:0000786GO:GO:0003677
GO:GO:0005634Gramene:AT4G27230.1Gramene:AT4G27230.2hmmpanther:PTHR23430
InterPro:IPR002119InterPro:IPR007125InterPro:IPR009072InterPro:IPR032454
InterPro:IPR032458KEGG:ath:AT4G27230KO:K11251OMA:MPNIHQT
PaxDb:Q0WRA6Pfam:O81826Pfam:PF00125Pfam:PF16211
PhylomeDB:Q0WRA6PRIDE:Q0WRA6PRINTS:PR00620PROSITE:PS00046
ProteinModelPortal:Q0WRA6RefSeq:NP_001190852.1RefSeq:NP_194453.1scanprosite:PS00046
SMART:SM00414SMR:Q0WRA6STRING:3702.AT4G27230.1SUPFAM:SSF47113
TAIR:AT4G27230tair10-symbols:HTA2UniGene:At.2335UniProt:O81826
UniProt:Q0WRA6
Coordinates (TAIR10) chr4:-:13637515..13638325
Molecular Weight (calculated) 13833.80 Da
IEP (calculated) 10.72
GRAVY (calculated) -0.26
Length 131 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRGKQLGS GAAKKSTSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)