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AT4G27060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18577573 (2008): cytoskeleton microtubules
  • PMID:15557095 (2004): cytoskeleton
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Encodes a novel, plant-specific microtubule-associated protein that regulates the orientation of cortical microtubules and the direction of organ growth. The protein plays a role in control of microtubule dependent anisotropic cell elongation. spr2 mutant rosette leaves, cauline leaves, roots, petioles and petals curl in an anticlockwise direction.
Computational
Description (TAIR10)
TORTIFOLIA 1 (TOR1); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G50890.1); Has 232 Blast hits to 225 proteins in 36 species: Archae - 2; Bacteria - 8; Metazoa - 6; Fungi - 6; Plants - 191; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
BioGrid:14101eggNOG:ENOG410IHYYeggNOG:ENOG410ZR3MEMBL:AB176521EMBL:AJ249836EMBL:AL035680EMBL:AL161566
EMBL:BT006451EMBL:CP002687EnsemblPlants:AT4G27060EnsemblPlants:AT4G27060.1entrez:828814Gene3D:1.25.10.10GeneID:828814
Genevisible:Q9T041GO:GO:0007275GO:GO:0008017GO:GO:0009826GO:GO:0010005GO:GO:0010031Gramene:AT4G27060.1
hmmpanther:PTHR31355hmmpanther:PTHR31355:SF7HOGENOM:HOG000029994InParanoid:Q9T041IntAct:Q9T041InterPro:IPR011989InterPro:IPR016024
InterPro:IPR033337iPTMnet:Q9T041KEGG:ath:AT4G27060MINT:MINT-8070293ncoils:CoilOMA:SEPWDSYPANTHER:PTHR31355
PaxDb:Q9T041Pfam:Q9T041PhylomeDB:Q9T041PIR:T06036PRIDE:Q9T041PRO:PR:Q9T041ProteinModelPortal:Q9T041
Proteomes:UP000006548RefSeq:NP_194436.2SMR:Q9T041STRING:3702.AT4G27060.1SUPFAM:SSF48371TAIR:AT4G27060tair10-symbols:CN
tair10-symbols:SPR2tair10-symbols:TOR1UniGene:At.32124UniProt:Q9T041
Coordinates (TAIR10) chr4:-:13581581..13585070
Molecular Weight (calculated) 94009.60 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.49
Length 864 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)