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AT4G27030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : fatty acid desaturase A
Curator
Summary (TAIR10)
Encodes an unusual palmitate desaturase that is highly substrate specific. It introduces a delta-3 trans double bond at palmitate at the sn-2 position of phosphatidylglycerol.
Computational
Description (TAIR10)
fatty acid desaturase A (FADA); FUNCTIONS IN: Delta 3-trans hexadecenoic acid phosphatidylglycerol desaturase activity; INVOLVED IN: response to karrikin, phosphatidylglycerol metabolic process, unsaturated fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kua-ubiquitin conjugating enzyme hybrid, localisation (InterPro:IPR019547); BEST Arabidopsis thaliana protein match is: Kua-ubiquitin conjugating enzyme hybrid localisation domain (TAIR:AT1G62190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:828811EC:1.14.19.43eggNOG:ENOG410XRWReggNOG:KOG3011EMBL:AF389291EMBL:AL035440EMBL:AL161566
EMBL:BT002250EMBL:CP002687EnsemblPlants:AT4G27030EnsemblPlants:AT4G27030.1entrez:828811GeneID:828811Genevisible:Q9SZ42
GO:GO:0006636GO:GO:0009507GO:GO:0016021GO:GO:0016567GO:GO:0031625GO:GO:0031969GO:GO:0046471
GO:GO:0052637GO:GO:0061630GO:GO:0080167Gramene:AT4G27030.1gramene_pathway:1.14.99.-gramene_pathway:PWY-762hmmpanther:PTHR24067
hmmpanther:PTHR24067:SF41HOGENOM:HOG000012766InParanoid:Q9SZ42InterPro:IPR019547iPTMnet:Q9SZ42KEGG:ath:AT4G27030KO:K10704
OMA:VYHWGIDPaxDb:Q9SZ42Pfam:PF10520Pfam:Q9SZ42PhylomeDB:Q9SZ42PIR:T04826PRO:PR:Q9SZ42
Proteomes:UP000006548RefSeq:NP_194433.1SMR:Q9SZ42STRING:3702.AT4G27030.1TAIR:AT4G27030tair10-symbols:FAD4tair10-symbols:FADA
UniGene:At.48906UniGene:At.68944UniPathway:UPA00199UniProt:Q9SZ42
Coordinates (TAIR10) chr4:+:13571951..13572922
Molecular Weight (calculated) 36381.40 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.20
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSLPTKYP LRPITNIPKS HRPSLLRVRV TCSVTTTKPQ PNREKLLVEQ RTVNLPLSND QSLQSTKPRP NREKLVVEQR LASPPLSNDP TLKSTWTHRL
101: WVAAGCTTLF VSLAKSVIGG FDSHLCLEPA LAGYAGYILA DLGSGVYHWA IDNYGDESTP VVGTQIEAFQ GHHKWPWTIT RRQFANNLHA LAQVITFTVL
201: PLDLAFNDPV FHGFVCTFAF CILFSQQFHA WAHGTKSKLP PLVVALQDMG LLVSRRQHAE HHRAPYNNNY CIVSGAWNNV LDESKVFEAL EMVFYFQLGV
301: RPRSWSEPNS DWIEETEISN NQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)