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AT4G26800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62680.1); Has 55507 Blast hits to 13757 proteins in 291 species: Archae - 5; Bacteria - 42; Metazoa - 586; Fungi - 574; Plants - 52777; Viruses - 0; Other Eukaryotes - 1523 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL035440EMBL:AL161565EMBL:BX828174EMBL:BX838540EMBL:CP002687
EnsemblPlants:AT4G26800EnsemblPlants:AT4G26800.1entrez:828787Gene3D:1.25.40.10GeneID:828787Genevisible:Q9SZ20hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF464HOGENOM:HOG000015176InParanoid:Q9SZ20InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9SZ20KEGG:ath:AT4G26800
OMA:IRSYNIVPaxDb:Q9SZ20Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9SZ20Pfscan:PS51375
PhylomeDB:Q9SZ20PIR:T04803PRO:PR:Q9SZ20PROSITE:PS51375ProteinModelPortal:Q9SZ20Proteomes:UP000006548RefSeq:NP_194410.2
SMR:Q9SZ20STRING:3702.AT4G26800.1TAIR:AT4G26800TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.49750UniProt:Q9SZ20
Coordinates (TAIR10) chr4:+:13490251..13491458
Molecular Weight (calculated) 41255.80 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.00
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKMMKLGIE PDIVTASSLV NGFCLSNSIK DAVYVAGQME KMGIKRDVVV DTILIDTLCK NRLVVPALEV LKRMKDRGIS PNVVTYSSLI TGLCKSGRLA
101: DAERRLHEMD SKKINPNVIT FSALIDAYAK RGKLSKVDSV YKMMIQMSID PNVFTYSSLI YGLCMHNRVD EAIKMLDLMI SKGCTPNVVT YSTLANGFFK
201: SSRVDDGIKL LDDMPQRGVA ANTVSCNTLI KGYFQAGKID LALGVFGYMT SNGLIPNIRS YNIVLAGLFA NGEVEKALSR FEHMQKTRND LDIITYTIMI
301: HGMCKACMVK EAYDLFYKLK FKRVEPDFKA YTIMIAELNR AGMRTEADAL NRFYQKHVRQ NESAPAEVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)