suba logo
AT4G26760.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.889
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At4g26760
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : microtubule-associated protein 65-2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
microtubule-associated protein 65-2 (MAP65-2); CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 65-1 (TAIR:AT5G55230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14070eggNOG:ENOG410YZBKeggNOG:KOG4302EMBL:AL035440EMBL:AL161565EMBL:AY085430EMBL:BT030366
EMBL:CP002687EnsemblPlants:AT4G26760EnsemblPlants:AT4G26760.1entrez:828783GeneID:828783Genevisible:Q8LEG3GO:GO:0000226
GO:GO:0000911GO:GO:0000922GO:GO:0005634GO:GO:0005819GO:GO:0005874GO:GO:0007067GO:GO:0008283
GO:GO:0009524GO:GO:0009574GO:GO:0048528GO:GO:0055028GO:GO:0072686Gramene:AT4G26760.1hmmpanther:PTHR19321
hmmpanther:PTHR19321:SF11HOGENOM:HOG000238749InParanoid:Q8LEG3InterPro:IPR007145iPTMnet:Q8LEG3KEGG:ath:AT4G26760KO:K16732
ncoils:CoilOMA:NSMSFEYPANTHER:PTHR19321PaxDb:Q8LEG3Pfam:PF03999Pfam:Q8LEG3PhylomeDB:Q8LEG3
PIR:T04799PRIDE:Q8LEG3PRO:PR:Q8LEG3ProteinModelPortal:Q8LEG3Proteomes:UP000006548RefSeq:NP_567756.1SMR:Q8LEG3
STRING:3702.AT4G26760.1TAIR:AT4G26760tair10-symbols:MAP65-2UniGene:At.32160UniProt:Q8LEG3
Coordinates (TAIR10) chr4:-:13478834..13481300
Molecular Weight (calculated) 65208.20 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.63
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTEAENPL LGEITCGTLL QKLQEIWDEV GESDEERDKL LLQIEEECLN VYKKKVELAA KSRAELLQTL SDATVELSNL TTALGEKSYI DIPDKTSGTI
101: KEQLSAIAPA LEQLWQQKEE RVRAFSDVQS QIQKICEEIA GGLNNGPHVV DETDLSLKRL DDFQRKLQEL QKEKSDRLQK VLEFVSTVHD LCAVLRLDFL
201: STVTEVHPSL DEANGVQTKS ISNETLARLA KTVLTLKEDK MQRLKKLQEL ATQLTDLWNL MDTSDEEREL FDHVTSNISA SVHEVTASGA LALDLIEQAE
301: VEVDRLDQLK SSRMKEIAFK KQSELEEIYA RAHIEIKPEV VRERIMSLID AGNTEPTELL ADMDSQIAKA KEEAFSRKEI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI TAMVDTLIAK TRAWEEENSM SFEYDGVPLL AMLDEYTMLR QEREDEKRRL KEQKKQQEQP HTDQESAFGS
501: KPSPARPVSA KKPVGTRVNG GGLNETPMRR LSMNSNQNGS KSKRDSLNKI ASPSNIVANT KDDAASPVSR ADPVMASP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)