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AT4G26680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL035440EMBL:AL161565EMBL:CP002687EnsemblPlants:AT4G26680EnsemblPlants:AT4G26680.1
EnsemblPlants:AT4G26680.2entrez:828775Gene3D:1.25.40.10GeneID:828775Genevisible:Q9SZ10GO:GO:0005739Gramene:AT4G26680.1
Gramene:AT4G26680.2hmmpanther:PTHR24015hmmpanther:PTHR24015:SF415HOGENOM:HOG000243392InParanoid:Q9SZ10InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT4G26680OMA:EMRRCRIPaxDb:Q9SZ10Pfam:PF12854Pfam:PF13041Pfam:Q9SZ10Pfscan:PS51375
PhylomeDB:Q9SZ10PIR:T04791PRIDE:Q9SZ10PRO:PR:Q9SZ10PROSITE:PS51375ProteinModelPortal:Q9SZ10Proteomes:UP000006548
RefSeq:NP_001190849.1RefSeq:NP_194398.1SMR:Q9SZ10STRING:3702.AT4G26680.1TAIR:AT4G26680TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.23755UniGene:At.71071UniProt:Q9SZ10
Coordinates (TAIR10) chr4:+:13454853..13456418
Molecular Weight (calculated) 59367.80 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.37
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)