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AT4G26570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23713076 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23482856 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calcineurin B-like 3
Curator
Summary (TAIR10)
member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins)
Computational
Description (TAIR10)
calcineurin B-like 3 (CBL3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Calcineurin B protein (InterPro:IPR015757), Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 2 (TAIR:AT5G55990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14051DIP:DIP-33307NeggNOG:COG5126eggNOG:KOG0034EMBL:AF076253EMBL:AL078465EMBL:AL161565
EMBL:AY072441EMBL:AY085344EMBL:AY128880EMBL:CP002687EnsemblPlants:AT4G26570EnsemblPlants:AT4G26570.1entrez:828764
Gene3D:1.10.238.10GeneID:828764Genevisible:Q8LEM7GO:GO:0005509GO:GO:0005513GO:GO:0005773GO:GO:0005774
GO:GO:0005886GO:GO:0009705GO:GO:0016020GO:GO:0055075hmmpanther:PTHR23056hmmpanther:PTHR23056:SF44HOGENOM:HOG000233019
InParanoid:Q8LEM7IntAct:Q8LEM7InterPro:IPR002048InterPro:IPR011992iPTMnet:Q8LEM7KEGG:ath:AT4G26570KO:K06268
OMA:FAKMDKDPaxDb:Q8LEM7Pfam:PF13202Pfam:PF13499Pfam:PF13833Pfam:Q8LEM7Pfscan:PS50222
PhylomeDB:Q8LEM7PIR:T08923PRIDE:Q8LEM7PRO:PR:Q8LEM7PROSITE:PS50222ProteinModelPortal:Q8LEM7Proteomes:UP000006548
RefSeq:NP_194387.1RefSeq:NP_849449.1SMART:SM00054SMR:Q8LEM7STRING:3702.AT4G26570.2SUPFAM:SSF47473SwissPalm:Q8LEM7
TAIR:AT4G26570tair10-symbols:ATCBL3tair10-symbols:CBL3UniGene:At.22453UniProt:Q8LEM7
Coordinates (TAIR10) chr4:-:13408608..13409998
Molecular Weight (calculated) 26032.90 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.24
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQCIDGFKH VCSSFFRCFD IDIYKQSGGL GDPELLARET VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILGFEEFARA LSVFHPNAPI EDKIDFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEIIESIIDK TFEEADTKHD GRIDKEEWRT LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVEDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)