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AT4G26470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G24110.1); Has 9300 Blast hits to 7546 proteins in 1004 species: Archae - 0; Bacteria - 25; Metazoa - 3748; Fungi - 1101; Plants - 3090; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AK227901EMBL:AL022223EMBL:AL161565EMBL:BT021986EMBL:CP002687
EnsemblPlants:AT4G26470EnsemblPlants:AT4G26470.1entrez:828753Gene3D:1.10.238.10GeneID:828753Genevisible:Q52K82GO:GO:0005509
GO:GO:0005737hmmpanther:PTHR10891hmmpanther:PTHR10891:SF574HOGENOM:HOG000241952InParanoid:Q52K82InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247KEGG:ath:AT4G26470KO:K13448OMA:NCRTIFQPaxDb:Q52K82Pfam:PF13499Pfam:Q52K82
Pfscan:PS50222PhylomeDB:Q52K82PIR:T05057PRIDE:Q52K82PRO:PR:Q52K82PROSITE:PS00018PROSITE:PS50222
ProteinModelPortal:Q52K82Proteomes:UP000006548RefSeq:NP_001078450.1RefSeq:NP_194377.2scanprosite:PS00018SMART:SM00054SMR:Q52K82
STRING:3702.AT4G26470.1SUPFAM:SSF47473TAIR:AT4G26470UniGene:At.2167UniGene:At.66576UniProt:Q52K82
Coordinates (TAIR10) chr4:+:13371377..13372343
Molecular Weight (calculated) 26771.60 Da
IEP (calculated) 4.23
GRAVY (calculated) -0.56
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGAVTKSET LQKEWVPETK LEAKIIEAVQ RRASRGTTMK SFNSIVLKFP KIDDGLRNCK AIFQEFDEDS NGSIDHTELK NCIRKLEISF DEEEINDLFK
101: ACDINEDMGI TFTEFIVLLC LVYLLKDDSS TLQKKWTMGM PKLEPTFETL VDTFVFLDEN KDGYVSREEM VRAIDESGER SSGRIAMKRF EEMDWDKNGM
201: VNFKEFLFAF TQWVGIDENE EEEEEDNNEK A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)