AT4G26380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.563 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G03360.1); Has 1810 Blast hits to 735 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 8; Plants - 1725; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13338078..13341560 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115558.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 1016 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSESELMIS LISQLLSILG GGEDTHTPQL KSKLIALTCQ LISLVNSLDL DSQPEPESKL KSLIKQIIYV SNSVSEPGPE SQSVSVVTKM ISIIGSIDFD 0101: LKESEPELMS LTSQIFALIM AMDEESELFS LLSEVASLVQ TEEQKLINNQ QVPPLTTEEE EKDDLIYGYT DDMNWESELM FYIISKMIST LRGEDMCQEV 0201: ARDFIAYANQ LIPLIESLDM DSNSEPKQEP KITSLVRQII SLSKVVSGPE SQLVSLVTRI ISITSSTDLD PTESQWRLTS VTYKISRILK EIKDSEDSEM 0301: ASLINQIHDL VDAEEGRKPE SRLISSITQL MSHINSWSFY SGMDPKIISL IIRIIYLVRS MDLDSQTKPK SELMSLVTQT IAVYNSMDLD SQPRPLRKVV 0401: SVFSQYGFDV NSTVSDSESD SSENYVSHIK DSLKLEPEPE LISFIHRIGS LVISMNPNWE KLISFCPQFE VILSDDGKFQ VEEGRLSKNQ LSDDIPMKWN 0501: CLQVNWNLLK LHAGEKDFTH FRCRGCNGDN HKENEKAPLE VKHPLHPKHP LQLVLSQSSG GRTRECYCCD EDLLHIFYCC LACNFSMNVA CTKKPAVLYR 0601: NHPRWHEHTL ALFPRQASLT CNLCALADSS SPIYMCPPCD FVVHLRCTGL PRVIKISRHL HRISFTFSFD RGDLSCSVCR RKIDEDYGGY TCIKDGCSYA 0701: AHSKCATQKN VWDGIELEGE PEEVEEEVVD PFVTISDGVI QHFGHPQHHL RLDENTSRDY DEDKLCQACV MPIYFGNFYS CTQCNYILHE ACANFSRKMH 0801: HPVHPHVLTL VNSDGAINVR KECAACPWMC TTGFFYECSK EDFQLHVQCA NLSEPLVHES HMHPLFLTSK PGERRLCSAC KESYFSVTRE TFNCIECDFA 0901: LCFRCATLPQ KVRYKHDKHM LTLSYGEETS TMTYWCEVCE RNLNPKERFY KCDEYCSITL HIECMLGVAL YIRPGSSWIC FNNKKILIKM KAKKVAYTGI 1001: EPVTFALLAR RSNQLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)