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AT4G26370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : antitermination NusB domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NusB/RsmB/TIM44 (InterPro:IPR006027); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRQ3eggNOG:ENOG410YCTBEMBL:AY054564EMBL:BT008707EMBL:CP002687EnsemblPlants:AT4G26370EnsemblPlants:AT4G26370.1
entrez:828743ExpressionAtlas:Q93XY7Gene3D:1.10.940.10GeneID:828743GO:GO:0003723GO:GO:0006353GO:GO:0006355
GO:GO:0009507Gramene:AT4G26370.1hmmpanther:PTHR11078HOGENOM:HOG000240288InterPro:IPR006027InterPro:IPR011605KEGG:ath:AT4G26370
OMA:WDSHVVIPANTHER:PTHR11078Pfam:PF01029PhylomeDB:Q93XY7Proteomes:UP000006548RefSeq:NP_567745.1SMR:Q93XY7
STRING:3702.AT4G26370.1SUPFAM:SSF48013TAIR:AT4G26370UniGene:At.2177UniProt:Q93XY7
Coordinates (TAIR10) chr4:-:13334099..13336153
Molecular Weight (calculated) 33464.30 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.24
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGTFSPLCL RSSSNLCYFS SNVSPDSHRS IGFTLVDSLR PTNLVSLRTG NKRSSSSSLR LFLSPTRSAL RTPTISAEEV KDVPMPKIDK SGRLSSPRAA
101: RELALVILYA ACLEGSDPIR LFEKRINARR EPGYEFDKSS LLEYNHMSFG GPPVKTETKE EEDELVRHDE KESKIEAEVL SAPPKLVYSK LVLRFAKKLL
201: AAVVDKWDSH VVIIEKISPP DWKSAPAGRI LEFSILHLAM SEVAVLETRH PIVINEAVDL AKRFCDGSAP RIINGCLRTF VKDRATTSTP QALELKQEVS
301: V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)