suba logo
AT4G26320.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
arabinogalactan protein 13 (AGP13); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 14 (TAIR:AT5G56540.1); Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AF195894EMBL:AL049171EMBL:AL161565EMBL:BT024797EMBL:CP002687EnsemblPlants:AT4G26320EnsemblPlants:AT4G26320.1
entrez:828738GeneID:828738Genevisible:Q9STQ3GO:GO:0005886GO:GO:0031225Gramene:AT4G26320.1hmmpanther:PTHR34114
HOGENOM:HOG000029117InParanoid:Q9STQ3KEGG:ath:AT4G26320OMA:MEAMKMRPaxDb:Q9STQ3Pfam:Q9STQ3PIR:T06016
PRO:PR:Q9STQ3Proteomes:UP000006548RefSeq:NP_194362.1STRING:3702.AT4G26320.1TAIR:AT4G26320tair10-symbols:AGP13TMHMM:TMhelix
UniGene:At.23354UniProt:Q9STQ3
Coordinates (TAIR10) chr4:-:13317235..13317414
Molecular Weight (calculated) 6052.48 Da
IEP (calculated) 4.43
GRAVY (calculated) 1.16
Length 59 amino acids
Sequence (TAIR10)
(BLAST)
1: MEAMKMRLFV AVLVAAMAFS AVQQAAAVEA PAPSPTSDAS LAIPAFFASV ATLAFGFLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)