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AT4G26310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : elongation factor P (EF-P) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT3G08740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0231eggNOG:ENOG410IWFAEMBL:AY054472EMBL:AY093290EMBL:CP002687EnsemblPlants:AT4G26310EnsemblPlants:AT4G26310.1
entrez:828737ExpressionAtlas:Q940K8Gene3D:2.30.30.30Gene3D:2.40.50.140GeneID:828737GO:GO:0003746GO:GO:0005737
Gramene:AT4G26310.1hmmpanther:PTHR30053hmmpanther:PTHR30053:SF1HOGENOM:HOG000010048IntAct:Q940K8InterPro:IPR001059InterPro:IPR008991
InterPro:IPR012340InterPro:IPR013185InterPro:IPR013852InterPro:IPR014722InterPro:IPR015365Pfam:PF01132Pfam:PF08207
Pfam:PF09285PhylomeDB:Q940K8PROSITE:PS01275Proteomes:UP000006548RefSeq:NP_567743.1scanprosite:PS01275SMART:SM00841
SMART:SM01185SMR:Q940K8STRING:3702.AT4G26310.2SUPFAM:SSF50104SUPFAM:SSF50249TAIR:AT4G26310UniGene:At.2890
UniProt:Q940K8
Coordinates (TAIR10) chr4:-:13314006..13316066
Molecular Weight (calculated) 28687.30 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.37
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGLHHFKRI SISRSLFSFS NATSPGAVTT RRSLYSLSRS LLSSTPYAAG GCCRETPPLH SPWSALQRRG VKVNAIQLRA GNVIERTGRT FRVVEAEHKQ
101: QGRGGASIQV ELRDVDTGNK LNLRFGSEES VEKVFVEEKS FTCLYAEGDT AYLIEPNTFE QVEVPLDIFG KAAVYLKEEM KVQLQLYDGR ALSASIPKHI
201: TCTVVETQLP MKGLTSAPRY KRALLDNGST IQVPSYLEAG EKIVINTEDD SFVKRDNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)