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AT4G26300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arginyl-tRNA synthetase, class Ic
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G26300-MONOMEREC:6.1.1.19eggNOG:COG0018eggNOG:KOG4426EMBL:AL049171EMBL:AL161565EMBL:CP002687
EMBL:Z98760EnsemblPlants:AT4G26300EnsemblPlants:AT4G26300.1entrez:828736Gene3D:1.10.730.10Gene3D:3.30.1360.70Gene3D:3.40.50.620
GeneID:828736Genevisible:O23247GO:GO:0004814GO:GO:0005524GO:GO:0005739GO:GO:0006420GO:GO:0009507
GO:GO:0009570GO:GO:0009793Gramene:AT4G26300.1gramene_pathway:6.1.1.19gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00123hmmpanther:PTHR11956
hmmpanther:PTHR11956:SF5HOGENOM:HOG000247212InParanoid:O23247InterPro:IPR001278InterPro:IPR001412InterPro:IPR005148InterPro:IPR008909
InterPro:IPR009080InterPro:IPR014729KEGG:00970+6.1.1.19KEGG:ath:AT4G26300KO:K01887OMA:KAWELICPANTHER:PTHR11956
PaxDb:O23247Pfam:PF00750Pfam:PF03485Pfam:PF05746PhylomeDB:O23247PIR:T06014PRIDE:O23247
PRINTS:PR01038PRO:PR:O23247PROSITE:PS00178ProteinModelPortal:O23247Proteomes:UP000006548RefSeq:NP_194360.1scanprosite:PS00178
SMART:SM00836SMART:SM01016SMR:O23247STRING:3702.AT4G26300.1SUPFAM:SSF47323SUPFAM:SSF52374SUPFAM:SSF55190
TAIR:AT4G26300tair10-symbols:emb1027TIGRfam:TIGR00456TIGRFAMs:TIGR00456UniGene:At.42946UniGene:At.75603UniProt:O23247
Coordinates (TAIR10) chr4:-:13308400..13313109
Molecular Weight (calculated) 72390.80 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.23
Length 642 amino acids
Sequence (TAIR10)
(BLAST)
001: MFIFPKDENR RETLTTKLRF SADHLTFTTV TEKLRATAWR FAFSSRAKSV VAMAANEEFT GNLKRQLAKL FDVSLKLTVP DEPSVEPLVA ASALGKFGDY
101: QCNNAMGLWS IIKGKGTQFK GPPAVGQALV KSLPTSEMVE SCSVAGPGFI NVVLSAKWMA KSIENMLIDG VDTWAPTLSV KRAVVDFSSP NIAKEMHVGH
201: LRSTIIGDTL ARMLEYSHVE VLRRNHVGDW GTQFGMLIEY LFEKFPDTDS VTETAIGDLQ VFYKASKHKF DLDEAFKEKA QQAVVRLQGG DPVYRKAWAK
301: ICDISRTEFA KVYQRLRVEL EEKGESFYNP HIAKVIEELN SKGLVEESEG ARVIFLEGFD IPLMVVKSDG GFNYASTDLT ALWYRLNEEK AEWIIYVTDV
401: GQQQHFNMFF KAARKAGWLP DNDKTYPRVN HVGFGLVLGE DGKRFRTRAT DVVRLVDLLD EAKTRSKLAL IERGKDKEWT PEELDQTAEA VGYGAVKYAD
501: LKNNRLTNYT FSFDQMLNDK GNTAVYLLYA HARICSIIRK SGKDIDELKK TGKLALDHAD ERALGLHLLR FAETVEEACT NLLPSVLCEY LYNLSEHFTR
601: FYSNCQVNGS PEETSRLLLC EATAIVMRKC FHLLGITPVY KI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)