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AT4G26230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L31e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L31e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054), Ribosomal protein L31e, conserved site (InterPro:IPR020052); BEST Arabidopsis thaliana protein match is: Ribosomal protein L31e family protein (TAIR:AT5G56710.1); Has 1093 Blast hits to 1093 proteins in 354 species: Archae - 146; Bacteria - 2; Metazoa - 458; Fungi - 148; Plants - 170; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2097eggNOG:KOG0893EMBL:AK228269EnsemblPlants:AT4G26230EnsemblPlants:AT4G26230.1entrez:828729ExpressionAtlas:Q0WRN2
Gene3D:3.10.440.10GeneID:828729GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT4G26230.1InterPro:IPR000054
InterPro:IPR020052InterPro:IPR023621KEGG:ath:AT4G26230KO:K02910OMA:DAKGLHTPaxDb:Q0WRN2Pfam:PF01198
Pfam:Q9STR1PhylomeDB:Q0WRN2PRIDE:Q0WRN2ProDom:PD006030PROSITE:PS01144ProteinModelPortal:Q0WRN2RefSeq:NP_194353.1
scanprosite:PS01144SMART:SM01380SMR:Q0WRN2STRING:3702.AT4G26230.1SUPFAM:0037549SUPFAM:SSF54575TAIR:AT4G26230
UniGene:At.43245UniGene:At.71547UniProt:Q0WRN2UniProt:Q9STR1
Coordinates (TAIR10) chr4:+:13286026..13286553
Molecular Weight (calculated) 13820.80 Da
IEP (calculated) 10.55
GRAVY (calculated) -0.90
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEKKGRKEE VVTREYTINL HRRLHSCTFK KKAPKAIKEI RKFAEKEMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKIIEEED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)