AT4G26190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G36540.1); Has 27570 Blast hits to 17450 proteins in 1040 species: Archae - 84; Bacteria - 2677; Metazoa - 10403; Fungi - 2363; Plants - 1406; Viruses - 96; Other Eukaryotes - 10541 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:13262473..13266282 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117639.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.57 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||
| Length | 1057 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MESVSVETLS ETGNSNDGQT NPELIDKHKK RSGKKKRKSR KLDNEVKDND SHISSQIGNA DEAFSSQEKK EGENEKSTSE SQVRLSENLL SSLPAESCQR 0101: DSVSCEEPRA TLHHTDPISC EDSLPDDNRK GSSTKKSKRR EKKKKKEDLS CEEKLLDEVE KITSEDQVHP PNNPLSNGMV QERSGELTQD SCEKPGAAQI 0201: CTDPNLSTCK DSLPDATNMT SSSKRKRNKR RDRNVLKESG VDIGSTNAEV AVTDNTTTEA EGSRSMSIEE NSVASVLING CLKSKVDTVE QLDGTDVQIN 0301: ETVFQTQSTK AKKRKKKKTK TMEACDPLGN TLPTSTESGP VECVENNDGN KEKDGNTEVK EDVREVKYDT ISEAEGSKST TKEEKSVASV VISSCLKSKD 0401: DTVEQKECTD VNISETVAQT QDPKAKRRKK RKTETIEVCD PLGNTLSTSM KSGPVERVEN NDGNGGRELI SYSASQTENY VNGEENGIQN LGKTKEKETD 0501: ENTEVKEDVL GAGVCDVRSK KRKGKKKKTS SADMEVFEPS GSVECLLNQS NEKDMQNFDG NAGQEFGGED MTIKIEKSAT REKSGVQKSG KRKEMTKDKN 0601: IESNQDALDA EGVSDDGHKR EKRKIKNKTN CESVATMDSE SVQSLLYQSN GEGVKNYEGN ADGEIASKDL ASNIEDSATK GESVQDDKNT KKRKKDRKGE 0701: VDQDAKGAEG VSTVEVTTKK SKKKKNLLDH KTDNMEEDSI KKNEKKEEVD QNDLGAEGVS KVEVKTKKSK RKKNSLDHKT DDMEGKDDVS LPRKDEEPEF 0801: DREKLETSLS SSVLIQNDNV AQGVISSETG DVPRCTCKAQ RTRKLVIFDL NGILADIVQG FTGTFLPDGK VSYRSVFRRP FLPSFLDFCF ERFDVAIWSS 0901: RRVGLDYMIN IVMKNHARNL LFCFDQNICT TTKFKTQEKK DKPLFLKDLR RVWDHIGTCI SCGKRKYDET NTLLVDDSPD KALCNPPHTG IFPSPYQYTN 1001: RQDSALGPEG ELRKYLERLA DAENVQKFVA ENPFGQTAIT ETHESWEFYS KAVEAHK |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)