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AT4G26130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.510
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56980.1); Has 121 Blast hits to 116 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JGYIeggNOG:ENOG4111DHQEMBL:AL049483EMBL:AL161564EMBL:AY074565EMBL:AY143913EMBL:CP002687
EnsemblPlants:AT4G26130EnsemblPlants:AT4G26130.1entrez:828719GeneID:828719GO:GO:0016021Gramene:AT4G26130.1hmmpanther:PTHR33098
hmmpanther:PTHR33098:SF13InterPro:IPR008480InterPro:IPR025520KEGG:ath:AT4G26130OMA:HNSEGDYPfam:PF05553Pfam:PF14364
PhylomeDB:Q9SZI4PIR:T04268Proteomes:UP000006548RefSeq:NP_194343.1STRING:3702.AT4G26130.1TAIR:AT4G26130TMHMM:TMhelix
UniGene:At.25514UniProt:Q9SZI4
Coordinates (TAIR10) chr4:-:13240403..13241263
Molecular Weight (calculated) 32757.60 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.96
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MELLTSLTNW LTPTTLFLLL NFTIATIFIT NRFSSCSRKH NQHQDGYGSS GHDQNQARFG RPPSLIDRVK SINFHLYNSP SPESEIHYSG SDPNPNPPPS
101: LLQRVKSINM PYFKFPQHNS EGDYAAYELM TQPDETNRVD PIDKIPEDDV TTEPRFGAPS LLQRVKSIKL PSLYRSDPDP TPEVQTHTRT KSESSKPATK
201: KKKKATKKMM KSASERHIGR EEEETVEAVE KRRPETMRVE RTTSIGDGGE EGVDDKASNF INKFKQQLKL QRLDSFLRYR EMLKND
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)