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AT4G26090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NB-ARC domain-containing disease resistance protein
Curator
Summary (TAIR10)
Encodes a plasma membrane protein with leucine-rich repeat, leucine zipper, and P loop domains that confers resistance to Pseudomonas syringae infection by interacting with the avirulence gene avrRpt2. RPS2 protein interacts directly with plasma membrane associated protein RIN4 and this interaction is disrupted by avrRpt2.
Computational
Description (TAIR10)
RESISTANT TO P. SYRINGAE 2 (RPS2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: RPS5-like 1 (TAIR:AT1G12210.1); Has 21906 Blast hits to 18242 proteins in 683 species: Archae - 18; Bacteria - 1169; Metazoa - 4701; Fungi - 258; Plants - 15223; Viruses - 0; Other Eukaryotes - 537 (source: NCBI BLink).
Protein Annotations
BioGrid:14002DIP:DIP-53465NeggNOG:COG4886eggNOG:KOG4658EMBL:AF368301EMBL:AF487797EMBL:AF487798
EMBL:AF487799EMBL:AF487800EMBL:AF487801EMBL:AF487802EMBL:AF487803EMBL:AF487804EMBL:AF487805
EMBL:AF487806EMBL:AF487807EMBL:AF487808EMBL:AF487809EMBL:AF487810EMBL:AF487811EMBL:AF487812
EMBL:AF487813EMBL:AF487814EMBL:AF487815EMBL:AF487816EMBL:AF487817EMBL:AF487818EMBL:AF487819
EMBL:AF487820EMBL:AF487821EMBL:AF487822EMBL:AF487823EMBL:AK117214EMBL:AL049483EMBL:AL161564
EMBL:BT005972EMBL:CP002687EMBL:U12860EMBL:U14158EMBL:U97217EnsemblPlants:AT4G26090EnsemblPlants:AT4G26090.1
entrez:828715Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:828715Genevisible:Q42484GO:GO:0005524GO:GO:0005737
GO:GO:0005886GO:GO:0006952GO:GO:0009626GO:GO:0016045GO:GO:0042742GO:GO:0043531Gramene:AT4G26090.1
hmmpanther:PTHR23155hmmpanther:PTHR23155:SF639InParanoid:Q42484IntAct:Q42484InterPro:IPR001611InterPro:IPR002182InterPro:IPR003593
InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT4G26090KO:K13459OMA:LIKMEYLPaxDb:Q42484PDB:2FT5
PDBsum:2FT5Pfam:PF00931Pfam:PF13855Pfam:Q42484PhylomeDB:Q42484PIR:A54809PRIDE:Q42484
PRO:PR:Q42484ProteinModelPortal:Q42484Proteomes:UP000006548RefSeq:NP_194339.1SMART:SM00382SMR:Q42484STRING:3702.AT4G26090.1
SUPFAM:SSF52058SUPFAM:SSF52540TAIR:AT4G26090tair10-symbols:RPS2UniGene:At.46720UniGene:At.69675UniGene:At.75226
UniProt:Q42484
Coordinates (TAIR10) chr4:+:13224596..13227325
Molecular Weight (calculated) 104647.00 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.22
Length 909 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFISSLIVG CAQVLCESMN MAERRGHKTD LRQAITDLET AIGDLKAIRD DLTLRIQQDG LEGRSCSNRA REWLSAVQVT ETKTALLLVR FRRREQRTRM
101: RRRYLSCFGC ADYKLCKKVS AILKSIGELR ERSEAIKTDG GSIQVTCREI PIKSVVGNTT MMEQVLEFLS EEEERGIIGV YGPGGVGKTT LMQSINNELI
201: TKGHQYDVLI WVQMSREFGE CTIQQAVGAR LGLSWDEKET GENRALKIYR ALRQKRFLLL LDDVWEEIDL EKTGVPRPDR ENKCKVMFTT RSIALCNNMG
301: AEYKLRVEFL EKKHAWELFC SKVWRKDLLE SSSIRRLAEI IVSKCGGLPL ALITLGGAMA HRETEEEWIH ASEVLTRFPA EMKGMNYVFA LLKFSYDNLE
401: SDLLRSCFLY CALFPEEHSI EIEQLVEYWV GEGFLTSSHG VNTIYKGYFL IGDLKAACLL ETGDEKTQVK MHNVVRSFAL WMASEQGTYK ELILVEPSMG
501: HTEAPKAENW RQALVISLLD NRIQTLPEKL ICPKLTTLML QQNSSLKKIP TGFFMHMPVL RVLDLSFTSI TEIPLSIKYL VELYHLSMSG TKISVLPQEL
601: GNLRKLKHLD LQRTQFLQTI PRDAICWLSK LEVLNLYYSY AGWELQSFGE DEAEELGFAD LEYLENLTTL GITVLSLETL KTLFEFGALH KHIQHLHVEE
701: CNELLYFNLP SLTNHGRNLR RLSIKSCHDL EYLVTPADFE NDWLPSLEVL TLHSLHNLTR VWGNSVSQDC LRNIRCINIS HCNKLKNVSW VQKLPKLEVI
801: ELFDCREIEE LISEHESPSV EDPTLFPSLK TLRTRDLPEL NSILPSRFSF QKVETLVITN CPRVKKLPFQ ERRTQMNLPT VYCEEKWWKA LEKDQPNEEL
901: CYLPRFVPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)