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AT4G26000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.793
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding KH domain-containing protein
Curator
Summary (TAIR10)
Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway.
Computational
Description (TAIR10)
PEPPER (PEP); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: shoot development, gynoecium development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT3G04610.1); Has 2804 Blast hits to 2065 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1818; Fungi - 225; Plants - 670; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNN8eggNOG:KOG2190EMBL:AL049483EMBL:AL161564EMBL:AY056288EMBL:AY099659EMBL:AY114064
EMBL:CP002687EnsemblPlants:AT4G26000EnsemblPlants:AT4G26000.1entrez:828706Gene3D:3.30.1370.10GeneID:828706Genevisible:Q9SZH4
GO:GO:0003723GO:GO:0005634GO:GO:0006355GO:GO:0006396GO:GO:0009299GO:GO:0048367GO:GO:0048467
GO:GO:0048577GO:GO:0048579Gramene:AT4G26000.1hmmpanther:PTHR10288hmmpanther:PTHR10288:SF132HOGENOM:HOG000243588IntAct:Q9SZH4
InterPro:IPR004087InterPro:IPR004088iPTMnet:Q9SZH4KEGG:ath:AT4G26000KO:K13162OMA:EEPEAYMPaxDb:Q9SZH4
Pfam:PF00013Pfam:Q9SZH4Pfscan:PS50084PhylomeDB:Q9SZH4PIR:T04255PRIDE:Q9SZH4PRO:PR:Q9SZH4
PROSITE:PS50084ProteinModelPortal:Q9SZH4Proteomes:UP000006548RefSeq:NP_194330.1SMART:SM00322SMR:Q9SZH4STRING:3702.AT4G26000.1
SUPFAM:SSF54791TAIR:AT4G26000tair10-symbols:PEPUniGene:At.23137UniGene:At.66652UniProt:Q9SZH4
Coordinates (TAIR10) chr4:+:13197280..13199539
Molecular Weight (calculated) 54027.70 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.29
Length 495 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)