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AT4G25980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.948
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G77100.1); Has 4310 Blast hits to 4291 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 82; Plants - 4190; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25980-MONOMEREC:1.11.1.7eggNOG:ENOG410IGE0eggNOG:ENOG410YB2Z
EMBL:AL049483EMBL:AL161564EMBL:CP002687EnsemblPlants:AT4G25980
EnsemblPlants:AT4G25980.1entrez:828704GeneID:828704Genevisible:Q9SZH2
GO:GO:0004601GO:GO:0005576GO:GO:0006979GO:GO:0020037
GO:GO:0042744GO:GO:0046872Gramene:AT4G25980.1hmmpanther:PTHR31235
hmmpanther:PTHR31235:SF16HOGENOM:HOG000237556InParanoid:Q9SZH2InterPro:IPR000823
InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793KEGG:00940+1.11.1.7
KEGG:ath:AT4G25980KO:K00430PaxDb:Q9SZH2PeroxiBase:209
Pfam:PF00141Pfam:Q9SZH2Pfscan:PS50873PhylomeDB:Q9SZH2
PRIDE:Q9SZH2PRINTS:PR00458PRINTS:PR00461PRO:PR:Q9SZH2
PROSITE:PS00435PROSITE:PS50873ProteinModelPortal:Q9SZH2Proteomes:UP000006548
RefSeq:NP_194328.1scanprosite:PS00435SMR:Q9SZH2STRING:3702.AT4G25980.1
SUPFAM:SSF48113TAIR:AT4G25980TMHMM:TMhelixUniGene:At.24680
UniGene:At.50365UniProt:Q9SZH2
Coordinates (TAIR10) chr4:+:13189393..13191507
Molecular Weight (calculated) 40418.20 Da
IEP (calculated) 6.66
GRAVY (calculated) 0.22
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVSIPVLMK RLCLYNSLSL FLFHLFPSPS LALSFSVELN LLKAQMVWAN AKMRLALSLV TVFFGISLAN LEVGFYSNTC PQAESIVKRV VSGAALSDPN
101: LPAILLRLHF HDCFVEGCDG SILVNNGAIS EKNAFGHEGV RGFEIVEAVK AELEAACPGV VSCSDIVALA ARDAISLANG PAYEVPTGRR DGRVSNMSLA
201: KDMPEVSDSI EILKAKFMQK GLNAKDLVLL SAAHTIGTTA CFFMSKRLYD FLPGGQPDPT INPTFLPELT TQCPQNGDIN VRLPIDRFSE RLFDKQILQN
301: IKDGFAVLQT DAGLYEDVTT RQVVDSYLGM LNPFFGPTFE SDFVKAIVKM GKIGVKTGFK GEIRRVCSAF N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)