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AT4G25970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17449644 (2007): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphatidylserine decarboxylase 3
Curator
Summary (TAIR10)
Encodes the major form of the two non-mitochondrail phosphatidylserine decarboxylase. Located at the ER.
Computational
Description (TAIR10)
phosphatidylserine decarboxylase 3 (PSD3); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 2 (TAIR:AT5G57190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25970-MONOMERBioCyc:MetaCyc:AT4G25970-MONOMEREC:4.1.1.65eggNOG:COG0688eggNOG:KOG2419EMBL:AL049483EMBL:AL161564
EMBL:CP002687EMBL:EF203901EnsemblPlants:AT4G25970EnsemblPlants:AT4G25970.1entrez:828703Gene3D:1.10.238.10Gene3D:2.60.40.150
GeneID:828703Genevisible:A4GNA8GO:GO:0004609GO:GO:0005509GO:GO:0005783GO:GO:0005789GO:GO:0006646
GO:GO:0016540Gramene:AT4G25970.1gramene_pathway:4.1.1.65gramene_pathway:PWY-5669HAMAP:MF_00663HOGENOM:HOG000254780InParanoid:A4GNA8
InterPro:IPR000008InterPro:IPR002048InterPro:IPR003817InterPro:IPR011992InterPro:IPR018247InterPro:IPR033177KEGG:00564+4.1.1.65
KEGG:ath:AT4G25970KO:K01613OMA:RIVKADMPaxDb:A4GNA8Pfam:A4GNA8Pfam:PF00168Pfam:PF02666
Pfam:PF13499Pfam:PF13833Pfscan:PS50222PhylomeDB:A4GNA8PIR:T04252PRIDE:A4GNA8PRO:PR:A4GNA8
PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:A4GNA8Proteomes:UP000006548RefSeq:NP_567736.3scanprosite:PS00018SMART:SM00054
SMR:A4GNA8STRING:3702.AT4G25970.1SUPFAM:SSF47473SUPFAM:SSF49562TAIR:AT4G25970tair10-symbols:PSD3TIGRfam:TIGR00163
TIGRFAMs:TIGR00163UniGene:At.24680UniPathway:UPA00558UniProt:A4GNA8
Coordinates (TAIR10) chr4:+:13184240..13189139
Molecular Weight (calculated) 70356.20 Da
IEP (calculated) 5.18
GRAVY (calculated) -0.14
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNGNSTETK ESRRSKMRKK IQNFRSRRRL SRPGSGSVSG LASQRSVSAD DFAGIALLTL IGAEMKFKDK WLACVSFGEQ TFRSEISDST EKPIWNSEKK
101: LLLEKNGPSL ARISVFETNR LLKNNIVGYC ELDLLDFVVQ EPDSTCKSFD LLDPASSNVV GSMFVSCSVE DPVETETCFA KRILSIVDYD EDGKLSFSEF
201: SDLMNAFGNV VAANKKEELF KAADLNGDGV VTIDELAALL AVQQEQEPII NSCPVCGEAL QLDKLNAMIH MTLCFDEGTG NQMTGGFLTD RQASYGWMFK
301: LSEWTHLSTY DVGLNTGSSA SHIVVIDRKT KRLVEELIDS KIVMSMRAIY QSKIGLRLMD QGAKEILQNL SEKQGKKMNS VESAQNIPSF LEFFKDQINM
401: AEVKYPLDHF KTFNEFFVRE LKPGARPIAC MDQDDVAVSA ADCRLMAFQS VDDSTRFWIK GRKFSIKGLL GNDVQSDAFL DGSLVIFRLA PQDYHRFHSP
501: VSGVIEKFVN VSGSLYTVNP IAVNSKYCNV FTENKRTIVI ISTAEFGKVA FVAIGATMVG SISFVRQEGD HVKKGDELGY FSFGGSTVIC VFEKDSIKID
601: EDLLANSARS LETLVTVGMQ LGVSFPKLEN CVLEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)