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AT4G25940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.718
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/ANTH/VHS superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT5G57200.1); Has 8063 Blast hits to 4237 proteins in 339 species: Archae - 25; Bacteria - 270; Metazoa - 3478; Fungi - 641; Plants - 597; Viruses - 312; Other Eukaryotes - 2740 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ90eggNOG:KOG0251EMBL:AL049483EMBL:AL161564EMBL:AY070045EMBL:AY096427EMBL:CP002687
EnsemblPlants:AT4G25940EnsemblPlants:AT4G25940.1entrez:828700Gene3D:1.20.58.150Gene3D:1.25.40.90GeneID:828700Genevisible:Q8VYT2
GO:GO:0005545GO:GO:0005794GO:GO:0005905GO:GO:0006897GO:GO:0030136GO:GO:0048268Gramene:AT4G25940.1
hmmpanther:PTHR22951hmmpanther:PTHR22951:SF17HOGENOM:HOG000238535InParanoid:Q8VYT2InterPro:IPR008942InterPro:IPR011417InterPro:IPR013809
InterPro:IPR014712KEGG:ath:AT4G25940ncoils:CoilOMA:HQFSAGPPaxDb:Q8VYT2Pfam:PF07651Pfam:Q8VYT2
Pfscan:PS50942PhylomeDB:Q8VYT2PIR:T04249PRIDE:Q8VYT2PRO:PR:Q8VYT2PROSITE:PS50942ProteinModelPortal:Q8VYT2
Proteomes:UP000006548RefSeq:NP_194324.2SMART:SM00273SMR:Q8VYT2STRING:3702.AT4G25940.1SUPFAM:SSF48464SUPFAM:SSF89009
TAIR:AT4G25940UniGene:At.28423UniProt:Q8VYT2
Coordinates (TAIR10) chr4:-:13169792..13172700
Molecular Weight (calculated) 67771.40 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.62
Length 601 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR
101: EGDPTFREEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SDEELLEQLP
201: ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR
301: QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI
401: NPKAAEIEDR NALALAIYPP GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED DSARRQIQLT NAGYGHGGID
501: TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML
601: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)