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AT4G25830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G35760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYGZeggNOG:ENOG410YWVNEMBL:AK175371EMBL:AK175732
EMBL:AK176002EMBL:AK176011EMBL:AK176089EMBL:AK229626
EMBL:AL049480EMBL:AL161564EMBL:AY088797EMBL:CP002687
EnsemblPlants:AT4G25830EnsemblPlants:AT4G25830.1entrez:828688GeneID:828688
Genevisible:Q8L8U9GO:GO:0005829GO:GO:0005886GO:GO:0016021
GO:GO:0016226GO:GO:0051536Gramene:AT4G25830.1hmmpanther:PTHR11615
hmmpanther:PTHR11615:SF161HOGENOM:HOG000238832InParanoid:Q8L8U9InterPro:IPR006459
InterPro:IPR006702KEGG:ath:AT4G25830OMA:MGSAIILPaxDb:Q8L8U9
Pfam:PF04535Pfam:Q8L8U9Pfscan:PS51257PhylomeDB:Q8L8U9
PIR:T04237PRO:PR:Q8L8U9Proteomes:UP000006548RefSeq:NP_567729.1
STRING:3702.AT4G25830.1TAIR:AT4G25830TIGRfam:TIGR01569TIGRFAMs:TIGR01569
TMHMM:TMhelixUniGene:At.2903UniProt:Q8L8U9
Coordinates (TAIR10) chr4:+:13133727..13134790
Molecular Weight (calculated) 20091.80 Da
IEP (calculated) 9.51
GRAVY (calculated) 0.50
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKLRETEVI LRLCIVFFLL LTSCLIGLDS QTKEIAYIHK NVSFRYLLAL EAELYIDVVV AAYNLVQLGL GWYNVEQKTS NPKWFSYLLD QTAAYVVFAG
101: TSAAAQHSLL VVTGSRELQW MKWCYKFTRF CFQMGSAIIL NYIAAALMVL LSSISAFNLF RLYSPKRFFR FKSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)