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AT4G25820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 14
Curator
Summary (TAIR10)
Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 14 (XTH14); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: radicle, root; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 13 (TAIR:AT5G57540.1); Has 2269 Blast hits to 2247 proteins in 321 species: Archae - 0; Bacteria - 309; Metazoa - 0; Fungi - 454; Plants - 1389; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25820-MONOMERBRENDA:2.4.1.207CAZy:GH16EC:2.4.1.207eggNOG:COG2273eggNOG:ENOG410IFD4EMBL:AF093672
EMBL:AL049480EMBL:AL161564EMBL:AY093183EMBL:BT003385EMBL:CP002687EnsemblPlants:AT4G25820EnsemblPlants:AT4G25820.1
entrez:828687Gene3D:2.60.120.200GeneID:828687Genevisible:Q9ZSU4GO:GO:0004553GO:GO:0005618GO:GO:0010411
GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071555Gramene:AT4G25820.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF20
HOGENOM:HOG000236368InParanoid:Q9ZSU4InterPro:IPR000757InterPro:IPR008263InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
KEGG:ath:AT4G25820KO:K08235OMA:ESFDITWPaxDb:Q9ZSU4Pfam:PF00722Pfam:PF06955Pfam:Q9ZSU4
Pfscan:PS51762PhylomeDB:Q9ZSU4PIR:T04236PIRSF:PIRSF005604PRIDE:Q9ZSU4PRO:PR:Q9ZSU4PROSITE:PS01034
PROSITE:PS51762ProteinModelPortal:Q9ZSU4Proteomes:UP000006548RefSeq:NP_194312.1scanprosite:PS01034SMR:Q9ZSU4STRING:3702.AT4G25820.1
SUPFAM:SSF49899TAIR:AT4G25820tair10-symbols:ATXTH14tair10-symbols:XTH14tair10-symbols:XTR9TMHMM:TMhelixUniGene:At.2902
UniProt:Q9ZSU4
Coordinates (TAIR10) chr4:+:13130349..13131615
Molecular Weight (calculated) 32741.80 Da
IEP (calculated) 8.54
GRAVY (calculated) -0.34
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MACFATKQPL LLSLLLAIGF FVVAASAGNF YESFDITWGN GRANIFENGQ LLTCTLDKVS GSGFQSKKEY LFGKIDMKLK LVAGNSAGTV TAYYLSSKGT
101: AWDEIDFEFL GNRTGHPYTI HTNVFTGGKG DREMQFRLWF DPTADFHTYT VHWNPVNIIF LVDGIPIRVF KNNEKNGVAY PKNQPMRIYS SLWEADDWAT
201: EGGRVKIDWS NAPFKASYRN FNDQSSCSRT SSSKWVTCEP NSNSWMWTTL NPAQYGKMMW VQRDFMIYNY CTDFKRFPQG LPKECKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)