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AT4G25790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G57625.1); Has 3181 Blast hits to 3018 proteins in 396 species: Archae - 2; Bacteria - 78; Metazoa - 1651; Fungi - 340; Plants - 995; Viruses - 8; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2340eggNOG:KOG3017EMBL:AL049480EMBL:AL161564
EMBL:BT010823EMBL:BT011300EMBL:CP002687EnsemblPlants:AT4G25790
EnsemblPlants:AT4G25790.1entrez:828684Gene3D:3.40.33.10GeneID:828684
GO:GO:0005576Gramene:AT4G25790.1hmmpanther:PTHR10334hmmpanther:PTHR10334:SF204
HOGENOM:HOG000036879InterPro:IPR001283InterPro:IPR002413InterPro:IPR014044
InterPro:IPR018244KEGG:ath:AT4G25790OMA:KRIGCARPANTHER:PTHR10334
Pfam:PF00188PhylomeDB:Q9SW04PIR:T04233PRINTS:PR00837
PRINTS:PR00838PROSITE:PS01009PROSITE:PS01010Proteomes:UP000006548
RefSeq:NP_194309.1scanprosite:PS01009scanprosite:PS01010SMART:SM00198
SMR:Q9SW04STRING:3702.AT4G25790.1SUPFAM:SSF55797TAIR:AT4G25790
TMHMM:TMhelixUniGene:At.32231UniProt:Q9SW04
Coordinates (TAIR10) chr4:-:13122248..13123290
Molecular Weight (calculated) 23420.60 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.40
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTSTQAI VFAIALFLVA IQAVHADYYR HRPQRPITPS PPPYVAKPQP LPTPSPKPIL YQPPPTYQPP TGSFEQQFLD PHNTVRGGLG LPPLVWDVKI
101: ASYATWWANQ RRYDCSLTHS TGPYGENLFW GSGSDFTSTF AVESWTVEAK SYNHMTNTCE GDGMCGHYTQ IVWRETRRLG CARVVCENGA GVFITCNYDP
201: PGNYVGEKPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)