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AT4G25730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FtsJ-like methyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA processing, rRNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spb1, C-terminal (InterPro:IPR012920), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G01230.1); Has 30028 Blast hits to 21157 proteins in 1975 species: Archae - 200; Bacteria - 7297; Metazoa - 8731; Fungi - 3085; Plants - 939; Viruses - 236; Other Eukaryotes - 9540 (source: NCBI BLink).
Protein Annotations
EC:2.1.1.-eggNOG:COG0293eggNOG:KOG1098EMBL:CP002687EnsemblPlants:AT4G25730EnsemblPlants:AT4G25730.1entrez:828678
Gene3D:3.40.50.150GeneID:828678GO:GO:0000453GO:GO:0005730GO:GO:0008649Gramene:AT4G25730.1HAMAP:MF_01547
HAMAP:MF_03163hmmpanther:PTHR10920hmmpanther:PTHR10920:SF13InParanoid:F4JTD2InterPro:IPR002877InterPro:IPR012920InterPro:IPR015507
InterPro:IPR024576InterPro:IPR028589InterPro:IPR029063iPTMnet:F4JTD2KEGG:ath:AT4G25730KO:K14857ncoils:Coil
OMA:MIDRIYKPANTHER:PTHR10920PANTHER:PTHR10920:SF13PaxDb:F4JTD2Pfam:PF01728Pfam:PF07780Pfam:PF11861
PRIDE:F4JTD2ProteinModelPortal:F4JTD2Proteomes:UP000006548RefSeq:NP_194303.2SMR:F4JTD2STRING:3702.AT4G25730.1SUPFAM:SSF53335
TAIR:AT4G25730UniGene:At.27077UniProt:F4JTD2
Coordinates (TAIR10) chr4:-:13102906..13106718
Molecular Weight (calculated) 92272.40 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.93
Length 821 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKVKGKHRL DKYYRLAKER GFRSRASYKL LQLDAKYSLL HSAHAVLDLC AAPGGWMQVA VEKVPVGSLV LGIDLVPILP VRGCVTMTQD ITRTECKSKI
101: KQVMEQHGVS AFNLVLHDGS PNVGGAWAQE AMSQNALVID SVRLATEFLA RNGNLVTKVF RSRDYNSVLY CLGRLFEKVE VFKPPASRSA SAETYLVGLK
201: YLAPAKIDPR LLDYRHLFKE SAEPTRKVVD VLGGSKQKRN RDGYEDGESI LRRVASAADF IWSENPLDVL GTTTSISFDD QASLPLKEHD LTTEEIKILC
301: DDLPVLGKND FKHILKWRMQ IRKALTPEKK EVAKPEPDVG KEDEENEDDK LLNELEELTN TVDRKKKQAK KILAKRRAKD KARKATGPQM DVLEDGFVDN
401: ELFSLNAIKG KKDLMAVDND EDDNGNAVDS ENEDHGEGAS DDSKDSDRDS DEERQKYTEQ MEEIFEQAYE RYMVKKEGSA KQRKRARQAH AEKLEEGDGD
501: EEMKIDYDSD MNEEKDEANP LVVPLDDGVV QTKEEISNQW FSQNIFAEAV EEGDLGKDDS EDEIANKKKS KNLSKPDKSK QKASKASVLS DQSLPNSSKK
601: EDEFEVVPAP ATDSDSDSSS EDDVHTKAEI LACAKKMLRK KQREQMLDDA YNKHMFVDEG LPKWFVDDEK QHRQPMKPVT KDEVNAMKAQ FKEINARPAK
701: KVAEAKARKK RAAQKRLEKV RKKANTISDT ADISDRSKDK MIDKLYKKAA EPRKPRKELV VSKKGVGVKV GKGQKRVDRR MKSDDRKRGG GKPGRNGQKG
801: TGKAGQKGKR PAGKPRGRKP G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)