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AT4G25710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.417
nucleus 0.248
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G51250.1); Has 986 Blast hits to 967 proteins in 50 species: Archae - 4; Bacteria - 5; Metazoa - 105; Fungi - 0; Plants - 870; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:13963eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AK176558EMBL:AL050400EMBL:AL161563EMBL:BT029546
EMBL:CP002687EnsemblPlants:AT4G25710EnsemblPlants:AT4G25710.1entrez:828676ExpressionAtlas:Q9SZZ9Gene3D:2.130.10.80GeneID:828676
Genevisible:Q9SZZ9hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23HOGENOM:HOG000242515InParanoid:Q9SZZ9InterPro:IPR001810InterPro:IPR006652
InterPro:IPR011498InterPro:IPR015916OMA:ERRNTCEPaxDb:Q9SZZ9Pfam:PF00646Pfam:PF01344Pfam:PF07646
Pfam:Q9SZZ9PhylomeDB:Q9SZZ9PIR:T09563PRIDE:Q9SZZ9PRO:PR:Q9SZZ9ProteinModelPortal:Q9SZZ9Proteomes:UP000006548
RefSeq:NP_194301.1SMART:SM00256SUPFAM:0052715SUPFAM:SSF81383TAIR:AT4G25710UniGene:At.3356UniProt:Q9SZZ9
Coordinates (TAIR10) chr4:-:13098359..13099531
Molecular Weight (calculated) 43941.80 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.13
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MERLVSGETT TSSNMKKKKK KVSSTTNPSL PDDLVLVIIA RVSILYYPIL SLVSKSFRSL LASPELYKVR SLLGRRESRL YVCINMYSYK NGPSWFTLCR
101: KPDRTTTSSN KEEDRSSGYV LARIPIPHSP LTQRYSLAAV GSNIYNIGVT RYHHLTSSSV WVLDCRSHTW RQAPSLPVEL FRVSVSVLDQ KIYVAGLHQE
201: DGSDSLKNSV TVLDTETQVS DRVAIPCSVS QGKEIFISTS VGGKVNLVTG RKVVDYNPVE GSWEEVGDTM CEFMFSKCFC VVGNVLYSCA IDRVFRWYDT
301: EVRTWRNLEC LIGGRLPKLS PRAFVSLADY GGKLAVFWNQ GVGDWQMLWC AVIALERRNT CEILGNVEWS DHVLHVPKIR SYYNALSATL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)