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AT4G25680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PPPDE putative thiol peptidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G25660.1); Has 754 Blast hits to 754 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 56; Plants - 348; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111H3ZeggNOG:KOG0324EMBL:AK227649EMBL:AL050400
EMBL:AL161563EMBL:AY084962EMBL:BT003130EMBL:CP002687
EnsemblPlants:AT4G25680EnsemblPlants:AT4G25680.1entrez:828673GeneID:828673
Gramene:AT4G25680.1hmmpanther:PTHR12378hmmpanther:PTHR12378:SF9HOGENOM:HOG000006322
IntAct:Q9SZZ6InterPro:IPR008580KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-KEGG:ath:AT4G25680OMA:GNTAMRM
Pfam:PF05903PhylomeDB:Q9SZZ6PIR:T09560Proteomes:UP000006548
RefSeq:NP_194298.1SMART:SM01179STRING:3702.AT4G25680.1TAIR:AT4G25680
UniGene:At.32241UniProt:Q9SZZ6
Coordinates (TAIR10) chr4:+:13088425..13089952
Molecular Weight (calculated) 27804.80 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.45
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)