AT4G25580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CAP160 protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CAP160 protein; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1); Has 292 Blast hits to 249 proteins in 85 species: Archae - 0; Bacteria - 26; Metazoa - 66; Fungi - 33; Plants - 116; Viruses - 9; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13056320..13058657 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66523.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||
| Length | 626 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSQAQLQRT HGHHQAQEPI RIHHPEEEGH HEKGPSKVLK KVKEKAKKIK NVLTKHGHGH EHDRGEHIPD DHDLDQEDDE DDYNDNQLHG GAPARGKAHI 101: PVKEEIVPPG SKAFPVVSSS HTKPSEPVRG VGHEAMSRPI KHSGVPEKEE RRGAPTLTPH NTPVSLLSAT EDVTRTFVPD EHKSRNQSKV NIDRPKGLDQ 201: DPAAPGSHGG LSNYQSKVTD PIGKSTGEIG AASTVSAIGR LGLGTDLQKK SHGLDTKPTA QGSHGGMSSY QSKVTDPTGK GAGEQPSVAA FGRRNETGED 301: DHMGLGRDLR EKSHGFDTKS RPEMGKHIPA GDYGSRLGKE SPERSDEFDL GKDLPTRTQG IQNPQGFDSR GQRRGEEMHQ PNQSSYTDKI SLATSVVADK 401: AVAAKNAVAS KLGYSGEGGH ENRVEGAENP SSAGGYGSTV ASMVTPVYEK VKETGASVMT KLPFTGTGTE QGQDRGVSAK EFLTEKLSPG EEDKALSEVV 501: TEKLHLGGGG GETAPPKRGI VTQSEEVEKR LGGFKDPSSE AATKQGEAYA EKGEGGIAEK LRGAVTSWIA GTTEEVTQKS TESVQDSTQS LGSTIGNKMG 601: ITGSGGGEAG QQGSMPLQKR FQESGN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)