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AT4G25550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cleavage/polyadenylation specificity factor, 25kDa subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cleavage/polyadenylation specificity factor, 25kDa subunit; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, 25kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: homolog of CFIM-25 (TAIR:AT4G29820.1); Has 397 Blast hits to 397 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 88; Plants - 70; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioGrid:13947eggNOG:ENOG410XS8ZeggNOG:KOG1689EMBL:AK118070EMBL:AK220576EMBL:AK228476EMBL:AL022197
EMBL:AL161563EMBL:BT005519EMBL:CP002687EnsemblPlants:AT4G25550EnsemblPlants:AT4G25550.1entrez:828660GeneID:828660
Genevisible:Q8GXS3GO:GO:0003729GO:GO:0005849GO:GO:0006378GO:GO:0016787GO:GO:0046872hmmpanther:PTHR13047
HOGENOM:HOG000161320InParanoid:Q8GXS3IntAct:Q8GXS3InterPro:IPR015797InterPro:IPR016706KEGG:ath:AT4G25550KO:K14397
OMA:GDCLAQWPANTHER:PTHR13047PaxDb:Q8GXS3Pfam:PF13869Pfam:Q8GXS3PhylomeDB:Q8GXS3PIR:C85295
PIR:T05792PIRSF:PIRSF017888PRIDE:Q8GXS3PRO:PR:Q8GXS3ProteinModelPortal:Q8GXS3Proteomes:UP000006548Reactome:R-ATH-72163
RefSeq:NP_194285.2SMR:Q8GXS3STRING:3702.AT4G25550.1SUPFAM:SSF55811TAIR:AT4G25550UniGene:At.44085UniProt:Q8GXS3
Coordinates (TAIR10) chr4:+:13048519..13050873
Molecular Weight (calculated) 22830.90 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.33
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)