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AT4G25530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FLOWERING WAGENINGEN
Curator
Summary (TAIR10)
Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.
Computational
Description (TAIR10)
FLOWERING WAGENINGEN (FWA); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 7 (TAIR:AT5G52170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13945eggNOG:ENOG410JQ5BeggNOG:ENOG410ZPYCEMBL:AF178688EMBL:AF243535EMBL:AL022197EMBL:AL161563
EMBL:CP002687EnsemblPlants:AT4G25530EnsemblPlants:AT4G25530.1entrez:828658ExpressionAtlas:Q9FVI6Gene3D:1.10.10.60GeneID:828658
Genevisible:Q9FVI6GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006349GO:GO:0006351GO:GO:0007275
GO:GO:0008289GO:GO:0009911GO:GO:0031047GO:GO:0042803Gramene:AT4G25530.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF277
HOGENOM:HOG000243256InParanoid:Q9FVI6IntAct:Q9FVI6InterPro:IPR001356InterPro:IPR002913InterPro:IPR009057iPTMnet:Q9FVI6
KEGG:ath:AT4G25530MINT:MINT-8061463ncoils:CoilPaxDb:Q9FVI6Pfam:PF00046Pfam:PF01852Pfam:Q9FVI6
Pfscan:PS50071Pfscan:PS50848PhylomeDB:Q9FVI6PIR:A85295PRIDE:Q9FVI6PRO:PR:Q9FVI6PROSITE:PS50071
PROSITE:PS50848ProteinModelPortal:Q9FVI6Proteomes:UP000006548RefSeq:NP_567722.1SMART:SM00234SMART:SM00389SMR:Q9FVI6
STRING:3702.AT4G25530.1SUPFAM:SSF46689SUPFAM:SSF55961TAIR:AT4G25530tair10-symbols:FWAtair10-symbols:HDG6UniGene:At.2139
UniProt:B5BPE6UniProt:Q9FVI6
Coordinates (TAIR10) chr4:+:13039312..13042242
Molecular Weight (calculated) 76257.30 Da
IEP (calculated) 7.39
GRAVY (calculated) -0.32
Length 686 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGQGDLDAV GNIPKPGEAE GDEIDMINDM SGVNDQDGGR MRRTHRRTAY QTQELENFYM ENPHPTEEQR YELGQRLNMG VNQVKNWFQN KRNLEKINND
101: HLENVTLREE HDRLLATQDQ LRSAMLRSLC NICGKATNCG DTEYEVQKLM AENANLEREI DQFNSRYLSH PKQRMVSTSE QAPSSSSNPG INATPVLDFS
201: GGTRTSEKET SIFLNLAITA LRELITLGEV DCPFWMIDPI VRSKGVSKIY EKYRSSFNNV TKPPGQIVEA SRAKGLVPMT CVTLVKTLMD TGKWVNVFAP
301: IVPVASTHKV LSTGSGGTKS GSLQQIQAEF QVISPLVPKR KVTFIRYCKE IRQGLWVVVD VTPTQNPTLL PYGCSKRLPS GLIIDDLSNG YSQVTWIEQA
401: EYNESHIHQL YQPLIGYGIG LGAKRWLATL QRHCESLSTL SSTNLTEISP GLSAKGATEI VKLAQRMTLN YYRGITSPSV DKWQKIQVEN VAQNMSFMIR
501: KNVNEPGELT GIVLSASTSV WLPVNQHTLF AFISHLSFRH EWDILTNDTT MEETIRIQKA KRHGNIISLL KIVNNGMLVL QEIWNDASGA MVVYAPVETN
601: SIELVKRGEN SDSVKFLPSG FSIVPDGVNG SYHRGNTGGG CLLTFGLQIL VGINPTAALI QGTVKSVETL MAHTIVKIKS ALDLQT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)