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AT4G25500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arginine/serine-rich splicing factor 35
Curator
Summary (TAIR10)
encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.
Computational
Description (TAIR10)
arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2); Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10; Bacteria - 734; Metazoa - 9656; Fungi - 1783; Plants - 2169; Viruses - 46; Other Eukaryotes - 1420 (source: NCBI BLink).
Protein Annotations
BioGrid:13941eggNOG:COG0724eggNOG:KOG0106EMBL:AK317023EMBL:AK317405EMBL:AL022197EMBL:CP002687
EMBL:U76607EMBL:X99437EnsemblPlants:AT4G25500EnsemblPlants:AT4G25500.1EnsemblPlants:AT4G25500.2EnsemblPlants:AT4G25500.3EnsemblPlants:AT4G25500.4
entrez:828654ExpressionAtlas:P92965Gene3D:3.30.70.330GeneID:828654Genevisible:P92965GO:GO:0000166GO:GO:0000398
GO:GO:0003723GO:GO:0005681GO:GO:0008380GO:GO:0010445GO:GO:0016607GO:GO:0031053hmmpanther:PTHR24012
HOGENOM:HOG000276234InParanoid:P92965IntAct:P92965InterPro:IPR000504InterPro:IPR012677iPTMnet:P92965KEGG:ath:AT4G25500
KO:K12893OMA:HSPFKKEPaxDb:P92965Pfam:P92965Pfam:PF00076Pfscan:PS50102PhylomeDB:P92965
PIR:T05797PRIDE:P92965PRO:PR:P92965PROSITE:PS50102ProteinModelPortal:P92965Proteomes:UP000006548RefSeq:NP_001078447.1
RefSeq:NP_001190837.1RefSeq:NP_194280.1RefSeq:NP_974616.1SMART:SM00360SMR:P92965STRING:3702.AT4G25500.1SUPFAM:SSF54928
TAIR:AT4G25500tair10-symbols:At-RS40tair10-symbols:AT-SRP40tair10-symbols:ATRSP35tair10-symbols:ATRSP40tair10-symbols:RS40tair10-symbols:RSP35
UniGene:At.10187UniProt:P92965
Coordinates (TAIR10) chr4:+:13025168..13027243
Molecular Weight (calculated) 40321.70 Da
IEP (calculated) 10.76
GRAVY (calculated) -1.47
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)