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AT4G25380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : stress-associated protein 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
stress-associated protein 10 (SAP10); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G22820.2); Has 1084 Blast hits to 1007 proteins in 145 species: Archae - 2; Bacteria - 0; Metazoa - 503; Fungi - 9; Plants - 445; Viruses - 6; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111UWCeggNOG:KOG3173EMBL:AL079350EMBL:AL161563
EMBL:BT029305EMBL:CP002687EnsemblPlants:AT4G25380EnsemblPlants:AT4G25380.1
entrez:828641Gene3D:4.10.1110.10GeneID:828641Genevisible:Q9STJ9
GO:GO:0003677GO:GO:0005634GO:GO:0005737GO:GO:0008270
GO:GO:0010038GO:GO:0010042GO:GO:0010043GO:GO:0010045
GO:GO:0034605GO:GO:0070417GO:GO:0071472Gramene:AT4G25380.1
hmmpanther:PTHR10634hmmpanther:PTHR10634:SF36HOGENOM:HOG000238229InParanoid:Q9STJ9
InterPro:IPR000058InterPro:IPR002653KEGG:ath:AT4G25380OMA:RCGICKR
PaxDb:Q9STJ9Pfam:PF01428Pfam:PF01754Pfam:Q9STJ9
Pfscan:PS51036Pfscan:PS51039PhylomeDB:Q9STJ9PIR:T10218
PRO:PR:Q9STJ9PROSITE:PS51036PROSITE:PS51039ProteinModelPortal:Q9STJ9
Proteomes:UP000006548RefSeq:NP_194268.1SMART:SM00154SMART:SM00259
SMR:Q9STJ9STRING:3702.AT4G25380.1SUPFAM:SSF118310SUPFAM:SSF57716
TAIR:AT4G25380tair10-symbols:SAP10UniGene:At.65421UniProt:Q9STJ9
Coordinates (TAIR10) chr4:-:12975936..12976328
Molecular Weight (calculated) 14641.70 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.55
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNETEALPC EGGCGLYGTR VNNNLCSLCY KKSVLQHSPA LRFEPETEQS QCCPPTNSPA VEEEPVKKRR CGICKRKVGM LGFKCRCGHM FCGSHRYPEE
101: HSCPFDYKQS GRLALATQLP LIRADKLQRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)