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AT4G25370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At4g25370-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At4g25370-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Double Clp-N motif protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Double Clp-N motif protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: thylakoid, plastid stroma, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif protein (TAIR:AT4G12060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0542eggNOG:ENOG410IWDYEMBL:AL079350EMBL:AL161563EMBL:AY035135EMBL:AY059070EMBL:AY086824
EMBL:CP002687EnsemblPlants:AT4G25370EnsemblPlants:AT4G25370.1entrez:828640Gene3D:1.10.1780.10GeneID:828640Genevisible:Q93WL3
GO:GO:0009507GO:GO:0009532GO:GO:0009570GO:GO:0009579GO:GO:0009941GO:GO:0019538Gramene:AT4G25370.1
hmmpanther:PTHR11638hmmpanther:PTHR11638:SF105HOGENOM:HOG000006326IntAct:Q93WL3InterPro:IPR004176KEGG:ath:AT4G25370OMA:GFNEDKA
PaxDb:Q93WL3PDB:4Y0BPDBsum:4Y0BPfam:PF02861PhylomeDB:Q93WL3PIR:T10217ProteinModelPortal:Q93WL3
Proteomes:UP000006548RefSeq:NP_567718.1SMR:Q93WL3STRING:3702.AT4G25370.1SUPFAM:SSF81923TAIR:AT4G25370UniGene:At.21146
UniProt:Q93WL3
Coordinates (TAIR10) chr4:+:12972747..12974580
Molecular Weight (calculated) 26051.40 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.27
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)