AT4G25270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
Arabidopsis cell culture (plastidal marker)
onion epidermal cell layer (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G46790.1); Has 37561 Blast hits to 13487 proteins in 239 species: Archae - 0; Bacteria - 6; Metazoa - 116; Fungi - 110; Plants - 36880; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12937253..12938836 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59538.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.09 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSIVVHKPS FSYPSVSSSS MKKKPRHHQQ LKQHRQNQYN NNGFTSLSFT KPSPTPLLIE KQSIHRTQLE ALDSVITDLE TSAQKGISLT EPEIFASLLE 101: TCYSLRAIDH GVRVHHLIPP YLLRNNLGIS SKLVRLYASC GYAEVAHEVF DRMSKRDSSP FAWNSLISGY AELGQYEDAM ALYFQMAEDG VKPDRFTFPR 201: VLKACGGIGS VQIGEAIHRD LVKEGFGYDV YVLNALVVMY AKCGDIVKAR NVFDMIPHKD YVSWNSMLTG YLHHGLLHEA LDIFRLMVQN GIEPDKVAIS 301: SVLARVLSFK HGRQLHGWVI RRGMEWELSV ANALIVLYSK RGQLGQACFI FDQMLERDTV SWNAIISAHS KNSNGLKYFE QMHRANAKPD GITFVSVLSL 401: CANTGMVEDG ERLFSLMSKE YGIDPKMEHY ACMVNLYGRA GMMEEAYSMI VQEMGLEAGP TVWGALLYAC YLHGNTDIGE VAAQRLFELE PDNEHNFELL 501: IRIYSKAKRA EDVERVRQMM VDRGLET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)