AT4G25220.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.897 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : root hair specific 15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
root hair specific 15 (RHS15); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, transmembrane transport; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G30560.1); Has 24096 Blast hits to 23877 proteins in 2274 species: Archae - 433; Bacteria - 19651; Metazoa - 1044; Fungi - 1491; Plants - 385; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:12921161..12922762 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54379.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 504 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASWTSSQFL YEETKPWGIQ FLEKFKRSGR LSFKQYQALV FILTFVAYIA FHAARKPNSI VKGTLSASTI EGGWAPFDGP DGTALLGQID LAFLSVYAVG 101: MFVAGHLGDR LDLRTFLTIG MIGTGLFTAL FGVAFWANFH SFYYFLAVQV MAGLFQSIGW PCIVAVLGNW FDKKRRGMIM GVWSAHTSLG NIAGSLIASG 201: LLRYGWGWSF LGPAFLMTFL GIVVYLFLPV NPPTVEAERD GTEIDSTMRL GDTITESLLE SRMSTGFDRK AVGFMAAWKI PGVAPFAFCL FFTKLVSYTF 301: LYWLPFYVSH NMIGGEYLSE ETSGNLSTIF DVGGVVGGVL AGYISDQLNG RAITAAGFMY LAIPALFLYR VFGHISLTIN VILMFTSGVF IIGPFALITT 401: AVSADLGTHK SLKGNARALA TVSAIIDGTG SVGAAIGPVL TGYISAISWD AVFYMLMTAA LISGLLLTKL IIAEVKALLF GSEDEVAASS SSPPASRPPI 501: DVLV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)