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AT4G25200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At4g25200-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g25200-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (mitochondrial marker)

At4g25200-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : mitochondrion-localized small heat shock protein 23.6
Curator
Summary (TAIR10)
AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial
Computational
Description (TAIR10)
mitochondrion-localized small heat shock protein 23.6 (HSP23.6-MITO); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to heat; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G51440.1); Has 4365 Blast hits to 4365 proteins in 1128 species: Archae - 166; Bacteria - 2413; Metazoa - 2; Fungi - 150; Plants - 1316; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).
Protein Annotations
BioGrid:13910eggNOG:COG0071eggNOG:KOG0710EMBL:AK119118EMBL:AK317291EMBL:AL035396EMBL:AL161562
EMBL:BT005229EMBL:CP002687EMBL:U72958EMBL:X98375EMBL:Y11864EnsemblPlants:AT4G25200EnsemblPlants:AT4G25200.1
entrez:828623Gene3D:2.60.40.790GeneID:828623Genevisible:Q96331GO:GO:0005739GO:GO:0046686Gramene:AT4G25200.1
hmmpanther:PTHR11527hmmpanther:PTHR11527:SF95HOGENOM:HOG000238886InParanoid:Q96331IntAct:Q96331InterPro:IPR002068InterPro:IPR008978
InterPro:IPR031107KEGG:ath:AT4G25200KO:K13993OMA:ERNDVRQPANTHER:PTHR11527PaxDb:Q96331Pfam:PF00011
Pfam:Q96331Pfscan:PS01031PhylomeDB:Q96331PIR:T05541PRIDE:Q96331PRO:PR:Q96331PROSITE:PS01031
ProteinModelPortal:Q96331Proteomes:UP000006548RefSeq:NP_194250.1SMR:Q96331STRING:3702.AT4G25200.1SUPFAM:SSF49764TAIR:AT4G25200
tair10-symbols:ATHSP23.6-MITOtair10-symbols:HSP23.6-MITOUniGene:At.5398UniProt:Q96331
Coordinates (TAIR10) chr4:+:12917089..12917858
Molecular Weight (calculated) 23611.10 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.65
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)