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AT4G24830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arginosuccinate synthase family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
arginosuccinate synthase family; FUNCTIONS IN: argininosuccinate synthase activity, ATP binding; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Argininosuccinate synthase, conserved site (InterPro:IPR018223), Argininosuccinate synthase (InterPro:IPR001518); Has 8298 Blast hits to 8290 proteins in 2389 species: Archae - 194; Bacteria - 4604; Metazoa - 152; Fungi - 155; Plants - 73; Viruses - 0; Other Eukaryotes - 3120 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G24830-MONOMERBioCyc:ARA:GQT-28-MONOMERBioGrid:13875EC:6.3.4.5eggNOG:COG0137eggNOG:KOG1706EMBL:AL049657
EMBL:AL161562EMBL:AY065252EMBL:AY091319EMBL:CP002687EnsemblPlants:AT4G24830EnsemblPlants:AT4G24830.1entrez:828586
ExpressionAtlas:Q9SZX3Gene3D:3.40.50.620Gene3D:3.90.1260.10GeneID:828586Genevisible:Q9SZX3GO:GO:0004055GO:GO:0005524
GO:GO:0006526GO:GO:0009507GO:GO:0009536GO:GO:0009570gramene_plant_reactome:1119263gramene_plant_reactome:1119444gramene_plant_reactome:6876028
gramene_plant_reactome:6876031HAMAP:MF_00005hmmpanther:PTHR11587hmmpanther:PTHR11587:SF2HOGENOM:HOG000230093InParanoid:Q9SZX3InterPro:IPR001518
InterPro:IPR014729InterPro:IPR018223InterPro:IPR023434InterPro:IPR024074KEGG:00220+6.3.4.5KEGG:00250+6.3.4.5OMA:DPANEPM
PaxDb:Q9SZX3Pfam:PF00764Pfam:Q9SZX3PhylomeDB:Q9SZX3PIR:T06667PRIDE:Q9SZX3PRO:PR:Q9SZX3
PROSITE:PS00564PROSITE:PS00565ProteinModelPortal:Q9SZX3Proteomes:UP000006548Reactome:R-ATH-70635RefSeq:NP_194214.2scanprosite:PS00564
scanprosite:PS00565SMR:Q9SZX3STRING:3702.AT4G24830.1SUPFAM:SSF52402SUPFAM:SSF69864SwissPalm:Q9SZX3TAIR:AT4G24830
TIGRfam:TIGR00032TIGRFAMs:TIGR00032UniGene:At.3133UniPathway:UPA00068UniProt:Q9SZX3
Coordinates (TAIR10) chr4:-:12793085..12795857
Molecular Weight (calculated) 53848.60 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.20
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEISATSFP SSSSSALVIR SSHNGSLKCQ NVAVPKTTSQ FQELSLKRSQ LVGNAVVTGH VTGSRSCKNQ AIRAVLSGDG TALTTDSKEA GLRGKLKKVV
101: LAYSGGLDTS VIVPWLKENY GCEVVCFTAD VGQGIKELEG LEQKAKASGA SQLVVKDLTE EFVKDFIFPC LRAGAIYERK YLLGTSMARP VIAKAMVDVA
201: AEVGADAVAH GCTGKGNDQV RFELTFFSLN PELKVVAPWR EWEIQGREDA IEYAKKHNVP VPVTKKSIYS RDRNLWHLSH EGDLLEDPAN EPKKDMYMMS
301: VDPEDAPDQP EYIEIGIESG LPVALNGKAL SPATLLAELN TIGGKHGIGR IDMVENRLVG MKSRGVYETP GGTILFAAVQ ELESLTLDRE SIQVKDTLAL
401: KYAEMVYAGR WFDPLRESMD AFMEKITETT TGSVTLKLYK GSVSVTGRQS PNSLYRQDIS SFEGSEIYNQ ADAAGFIRLY GLPMKIRAML KKIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)