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AT4G24800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22430844 (2012): Golgi
  • PMID:21841088 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MA3 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZZeggNOG:KOG0403EMBL:AY062102EMBL:AY124878EMBL:CP002687EnsemblPlants:AT4G24800EnsemblPlants:AT4G24800.1
EnsemblPlants:AT4G24800.2EnsemblPlants:AT4G24800.3entrez:828582Gene3D:1.25.40.180GeneID:828582GO:GO:0005737GO:GO:0005794
GO:GO:0005829GO:GO:0009651GO:GO:0009723Gramene:AT4G24800.1Gramene:AT4G24800.2Gramene:AT4G24800.3hmmpanther:PTHR12626
hmmpanther:PTHR12626:SF0InterPro:IPR003891InterPro:IPR016021InterPro:IPR016024KEGG:ath:AT4G24800OMA:MARSLIFPfam:PF02847
Pfscan:PS51366PhylomeDB:Q8W4Q4PROSITE:PS51366Proteomes:UP000006548RefSeq:NP_001031708.1RefSeq:NP_001190828.1RefSeq:NP_567708.1
SMART:SM00544SMR:Q8W4Q4STRING:3702.AT4G24800.1SUPFAM:SSF48371TAIR:AT4G24800UniGene:At.21456UniProt:Q8W4Q4
Coordinates (TAIR10) chr4:+:12782463..12784902
Molecular Weight (calculated) 77439.90 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.27
Length 702 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGFLTDQQR EMMKVATQTA DDLPPSQKPH SVLLEHLPKP SGGGKASGAS NAVKHRRSHA GRSIRSKKDG GGGKGNWGKL IDTDGDYHID PNDPNYDSGE
101: EPFELVGATL SDPLDDYKKA AASIINEYFS TGDVDVAAAD LIELGSSEYH PYFIKRLVSV AMDRHDKEKE MASVLLSALY ADVINPNQIR DGFVLLLESA
201: DDFVVDIPDA VNVLALFLAR AVVDDILPPA FLPRAAKALP ITSKGYQVVQ TAEKSYLSAA HHAELVERRW GGQTRTTVEE VKKKIADILN EYVETGETYE
301: ACRCVRELGV SFFHHEVVKR ALVTALENHA AEAPVLKLLN EAASENLISS SQMVKGFSRL RESLDDLALD IPSARTKFGL IVPKAVSGGW LDASFGYPSG
401: ECGRQQNEDE KLKRFKEDIV TIIHEYFNSD DIPELIRSLE DLGAPEYNPI FLKKLITLAL DRKNHEKEMA SVLLSSLHIE MFTTEDVADG FVMLLESAED
501: TALDILDASN ELALFLARAV IDDVLAPFNL EEISSKLRPN SSGTETVKMA RSLIFARHAG ERLLRCWGGG SGWAVEDAKD KISNLLEEYE SSGLVSEACK
601: CIHELGMPFF NHEVVKKALV MGMEKKKDKM MLDLLQESFS EGLITTNQMT KGFTRVKDGL EDLALDIPNA KEKFNDYVEY GKKNGWVSSS FLTSLTEDAN
701: VG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)