AT4G24790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AAA-type ATPase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AAA-type ATPase family protein; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G14460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12778222..12781345 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93838.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.67 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 857 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGETRRHSVD VPITRTLVAL RRVRSLRDPC TTSMSKFASL LDNVKWETGS NNGISLQFVE HADDACKAAA DAPVGLIPFG SYSIMEELES GCDLHKLSSK 101: VINVEGDACS RSSERSCSDL SVKGRDLACN APSISHVEEA GSGGRYRTHY STKLASSVGE YGSRLGSPMN STNHSYYGDE DVDFDSQSNR GCGITYCWSR 201: TPRYRGSNQS SDVEEYPLLP GNGNGESDVV TPSHEVLSRS LSQKFRPKSF DELVGQEVVV KCLLSTILRG RITSVYLFHG PRGTGKTSTS KIFAAALNCL 301: SQAAHSRPCG LCSECKSYFS GRGRDVMETD SGKLNRPSYL RSLIKSASLP PVSSRFKVFI IDECQLLCQE TWGTLLNSLD NFSQHSVFIL VTSELEKLPR 401: NVLSRSQKYH FSKVCDADIS TKLAKICIEE GIDFDQGAVD FIASKSDGSL RDAEIMLDQL SLLGKRITTS LAYKLIGVVS DDELLDLLDL AMSSDTSNTV 501: IRARELMRSK IDPMQLISQL ANVIMDIIAG NSQESSSATR LRFLTRHTSE EEMQKLRNAL KILSDAEKHL RASKNQTTWL TVALLQLSNT DSSSFATDEN 601: GRNQINKDVE LSSTSSGCPG DVIKSDAEKG QERNCNETVE SVWKTVTDLC CSDSLKRFLW KRGRLTSLTV DKGVAIAELE FYTPQHVARA EKSWKLIADS 701: FQSVLGCNVE IQMNLVISAC SPPKSAKAAA SLFFGLFSCS RRMLHKSYLT TRTDSDCASE KPAVTNSLRS CQGNVLRARS VRSSANASSR MSCSSDQGDA 801: TSAMCTPHIP PGEKRPEDDT DVLCWKKTPL GKGQSETQNS KSSRLIGRVL PCSTAAN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)