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AT4G24700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3MWeggNOG:ENOG410ZHKXEMBL:AL035356EMBL:AL161562EMBL:BT002741EMBL:CP002687EnsemblPlants:AT4G24700
EnsemblPlants:AT4G24700.1entrez:828572GeneID:828572Gramene:AT4G24700.1hmmpanther:PTHR34665HOGENOM:HOG000239215IntAct:Q9SB65
KEGG:ath:AT4G24700ncoils:CoilOMA:MSHEPAHPhylomeDB:Q9SB65PIR:T05564Proteomes:UP000006548RefSeq:NP_194201.1
STRING:3702.AT4G24700.1TAIR:AT4G24700UniGene:At.32324UniProt:Q9SB65
Coordinates (TAIR10) chr4:-:12744807..12745238
Molecular Weight (calculated) 16864.90 Da
IEP (calculated) 10.49
GRAVY (calculated) -1.22
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKKREAKDE NEEEEEEKKK RLELMKAAAQ AWLSHSQTSK HTVLEFDAQR KHAFVKGKAS RFKTEALSAK HHPSFLDWEF GQSLWDPYEI LSVSKKLERE
101: LTLEEQTFSS SDNDGLKKMK KKKTRDSRNS LRSLFTRSSS KRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)