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AT4G24690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.726
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Zinc finger, ZZ-type (InterPro:IPR000433); Has 643 Blast hits to 609 proteins in 134 species: Archae - 0; Bacteria - 9; Metazoa - 374; Fungi - 110; Plants - 97; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411245WeggNOG:KOG4351eggNOG:KOG4582EMBL:AL035356EMBL:AL161562EMBL:AY062827EMBL:AY128759
EMBL:AY140081EMBL:BT008425EMBL:CP002687EnsemblPlants:AT4G24690EnsemblPlants:AT4G24690.1entrez:828571GeneID:828571
Genevisible:Q9SB64GO:GO:0005737GO:GO:0005773GO:GO:0006914GO:GO:0008270GO:GO:0015031GO:GO:0043130
GO:GO:0051258Gramene:AT4G24690.1hmmpanther:PTHR20930hmmpanther:PTHR20930:SF0HOGENOM:HOG000239211IntAct:Q9SB64InterPro:IPR000270
InterPro:IPR000433InterPro:IPR009060InterPro:IPR032350iPTMnet:Q9SB64KEGG:ath:AT4G24690KO:K17987OMA:LVWPQGT
PaxDb:Q9SB64Pfam:PF00564Pfam:PF00569Pfam:PF16158Pfscan:PS50135PhylomeDB:Q9SB64PIR:T05565
PROSITE:PS50135ProteinModelPortal:Q9SB64Proteomes:UP000006548RefSeq:NP_194200.1SMART:SM00291SMART:SM00666SMR:Q9SB64
STRING:3702.AT4G24690.1SUPFAM:SSF46934SUPFAM:SSF54277SUPFAM:SSF57850TAIR:AT4G24690UniGene:At.24692UniGene:At.71380
UniProt:Q9SB64
Coordinates (TAIR10) chr4:+:12741191..12744202
Molecular Weight (calculated) 76190.20 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.33
Length 704 amino acids
Sequence (TAIR10)
(BLAST)
001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)