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AT4G24660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 22
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox protein 22 (HB22); CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 25 (TAIR:AT5G65410.1); Has 493 Blast hits to 471 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:13857eggNOG:ENOG410IX1NeggNOG:ENOG410YEN7EMBL:AF439841EMBL:AL035356EMBL:AL161561EMBL:AY125563
EMBL:CP002687EnsemblPlants:AT4G24660EnsemblPlants:AT4G24660.1entrez:828568EvolutionaryTrace:Q9SB61Gene3D:1.10.10.60GeneID:828568
Genevisible:Q9SB61GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009793GO:GO:0042803
GO:GO:0046872Gramene:AT4G24660.1hmmpanther:PTHR31948hmmpanther:PTHR31948:SF20HOGENOM:HOG000238105InParanoid:Q9SB61IntAct:Q9SB61
InterPro:IPR006455InterPro:IPR006456InterPro:IPR009057KEGG:ath:AT4G24660OMA:NHAVNIGPaxDb:Q9SB61PDB:1WH7
PDBsum:1WH7Pfam:PF04770Pfam:Q9SB61Pfscan:PS51523PhylomeDB:Q9SB61PIR:T05568PRO:PR:Q9SB61
ProDom:PD125774PROSITE:PS51523ProteinModelPortal:Q9SB61Proteomes:UP000006548RefSeq:NP_194197.1SMR:Q9SB61STRING:3702.AT4G24660.1
SUPFAM:SSF46689TAIR:AT4G24660tair10-symbols:ATHB22tair10-symbols:HB22tair10-symbols:MEE68tair10-symbols:ZHD2TIGRfam:TIGR01565
TIGRfam:TIGR01566TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniGene:At.2543UniProt:Q9SB61
Coordinates (TAIR10) chr4:-:12724851..12725513
Molecular Weight (calculated) 24024.10 Da
IEP (calculated) 8.02
GRAVY (calculated) -0.84
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)