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AT4G24640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Encodes AppB protein (AppB1).
Computational
Description (TAIR10)
APPB1; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G50030.1); Has 48 Blast hits to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUDJeggNOG:ENOG41106Z5EMBL:AL035356EMBL:AL161561EMBL:AY087898EMBL:CP002687EnsemblPlants:AT4G24640
EnsemblPlants:AT4G24640.1entrez:828566Gene3D:1.20.140.40GeneID:828566GO:GO:0004857GO:GO:0005773GO:GO:0048046
Gramene:AT4G24640.1hmmpanther:PTHR31890HOGENOM:HOG000152455InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT4G24640
OMA:YIDAICDPfam:PF04043PhylomeDB:Q9SB59PIR:T05570Proteomes:UP000006548RefSeq:NP_194195.1SMART:SM00856
SMR:Q9SB59SUPFAM:SSF101148TAIR:AT4G24640tair10-symbols:APPB1TIGRfam:TIGR01614TIGRFAMs:TIGR01614UniGene:At.2545
unipathway:UPA00545UniProt:Q9SB59
Coordinates (TAIR10) chr4:+:12717851..12718804
Molecular Weight (calculated) 19936.80 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.03
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSSVLSTF AAAAITLQLL LSPASASPHM KYIDAICDRS HDQAFCVKTL TTNPPTAAPI GLLPLSEAVI NLAISHAEKT AIFVDETAKK DPTVKVAFTE
101: CHKAYLAVAA DLKSANVKLK ASPDTANYDV RASSDSMRRV NELVGKNTDK ASTTLKEMTV QMEKLLDLAA GAADAVDDDD ENMRLRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)