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AT4G24580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rho GTPase activation protein (RhoGAP) with PH domain
Curator
Summary (TAIR10)
Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube.
Computational
Description (TAIR10)
ROP1 ENHANCER 1 (REN1); CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Rho GTPase activation protein (RhoGAP) with PH domain (TAIR:AT5G12150.1); Has 23967 Blast hits to 18190 proteins in 1193 species: Archae - 153; Bacteria - 3871; Metazoa - 11779; Fungi - 2242; Plants - 901; Viruses - 71; Other Eukaryotes - 4950 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR4EeggNOG:KOG4271EMBL:AL035356EMBL:AL161561EMBL:CP002687EnsemblPlants:AT4G24580EnsemblPlants:AT4G24580.1
entrez:828560Gene3D:1.10.555.10Gene3D:2.30.29.30GeneID:828560Genevisible:F4JQZ3GO:GO:0005096GO:GO:0007165
GO:GO:0009860GO:GO:0016324GO:GO:0017048GO:GO:0040008GO:GO:0043547Gramene:AT4G24580.1hmmpanther:PTHR23176
hmmpanther:PTHR23176:SF42InParanoid:F4JQZ3InterPro:IPR000198InterPro:IPR001849InterPro:IPR008936InterPro:IPR011993InterPro:IPR025757
iPTMnet:F4JQZ3KEGG:ath:AT4G24580ncoils:CoilPaxDb:F4JQZ3Pfam:F4JQZ3Pfam:PF00169Pfam:PF00620
Pfam:PF14389Pfscan:PS50003Pfscan:PS50238PIR:T05576PRIDE:F4JQZ3PRO:PR:F4JQZ3PROSITE:PS50003
PROSITE:PS50238ProteinModelPortal:F4JQZ3Proteomes:UP000006548RefSeq:NP_194189.6SMART:SM00233SMART:SM00324SMR:F4JQZ3
STRING:3702.AT4G24580.1SUPFAM:SSF48350SUPFAM:SSF50729TAIR:AT4G24580tair10-symbols:REN1UniGene:At.54501UniProt:F4JQZ3
Coordinates (TAIR10) chr4:-:12687879..12694248
Molecular Weight (calculated) 101977.00 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.91
Length 933 amino acids
Sequence (TAIR10)
(BLAST)
001: MANKNAESSS QPPPHVQPNQ QQQQQPPIAN EQEQEPHGDT CSIPPAQSGN TDSRSRGGNT VFKSGPLSIS SKGIGWTSWK KRWFILTRTS LVFFRSDPSA
101: VQQKGSEVNL TLGGIDLNNS GSVVVKADKK LLTVLFPDGR DGRAFTLKAD TMEDLHEWKA ALENALTQAP SASHVMGQNG IFRNDHADPA VGVDEKKDET
201: PTKSTVLGRP VLLALEDVDG APSFLEKALR FVENHGVRIE GILRQAADVD DVEHRIREYE KGKNEFSPEE DAHIIADCLK YFLRELPSSP VPASCCNALL
301: EACRTDRGNR VNAMRAAICE SFPEPNRRLL QRILMMMQTV ASNKTVNRMN TNAVAACMAP LLLRPLLAGD CEIENDFDVG GDGSMQLLQA AAAANHAQAI
401: VITLLEEYES IFGTLTSSII NGLCLQEGSL SPGLYSDSEE SGSGTEEGSD DEEYDDDDDG SQGSEDYTDE EEDLENESNG SYSESAASED KYADSIDPDD
501: HKINDNLSTE SKSPKRSKEP KKLLSGSRRS SLPRHDDGKK DEDIVVKGVN NTEVKAVVEV STSEDKNSST SDVASDTQKP SKLSDAPGGS KRHWGRTPGK
601: KNLSMESIDF SVEVDEDNAD IERLESTKLE LQSRITEEVK SNAVLQASLE RRKKALYGRR QALEQDVGRL QEQLQQERDR KLALETGLNM SKGNQPIPET
701: IDENLKKDLQ EVAQAEADIA KLEHKVDDLE NRLGHHDGKA SGSTHSASKE SRKLPEHNAK MKEKQKDTEA ASTHISERST SKDGQGAARE NETEKQQDSR
801: SKSSQQETSR GSSKLVGLSK RSGTKGEGST TTTSALSKLT MRLNFLKERR SQIANELQNM DKGKTLGQPS PTSGQNRVSE ETEKGSGSNQ DPDSSKLQSP
901: HILDRGRSEN GGDRGRGSSG GNHPNTTPRT FSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)