AT4G24580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rho GTPase activation protein (RhoGAP) with PH domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROP1 ENHANCER 1 (REN1); CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Rho GTPase activation protein (RhoGAP) with PH domain (TAIR:AT5G12150.1); Has 23967 Blast hits to 18190 proteins in 1193 species: Archae - 153; Bacteria - 3871; Metazoa - 11779; Fungi - 2242; Plants - 901; Viruses - 71; Other Eukaryotes - 4950 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12687879..12694248 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101977.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 933 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANKNAESSS QPPPHVQPNQ QQQQQPPIAN EQEQEPHGDT CSIPPAQSGN TDSRSRGGNT VFKSGPLSIS SKGIGWTSWK KRWFILTRTS LVFFRSDPSA 101: VQQKGSEVNL TLGGIDLNNS GSVVVKADKK LLTVLFPDGR DGRAFTLKAD TMEDLHEWKA ALENALTQAP SASHVMGQNG IFRNDHADPA VGVDEKKDET 201: PTKSTVLGRP VLLALEDVDG APSFLEKALR FVENHGVRIE GILRQAADVD DVEHRIREYE KGKNEFSPEE DAHIIADCLK YFLRELPSSP VPASCCNALL 301: EACRTDRGNR VNAMRAAICE SFPEPNRRLL QRILMMMQTV ASNKTVNRMN TNAVAACMAP LLLRPLLAGD CEIENDFDVG GDGSMQLLQA AAAANHAQAI 401: VITLLEEYES IFGTLTSSII NGLCLQEGSL SPGLYSDSEE SGSGTEEGSD DEEYDDDDDG SQGSEDYTDE EEDLENESNG SYSESAASED KYADSIDPDD 501: HKINDNLSTE SKSPKRSKEP KKLLSGSRRS SLPRHDDGKK DEDIVVKGVN NTEVKAVVEV STSEDKNSST SDVASDTQKP SKLSDAPGGS KRHWGRTPGK 601: KNLSMESIDF SVEVDEDNAD IERLESTKLE LQSRITEEVK SNAVLQASLE RRKKALYGRR QALEQDVGRL QEQLQQERDR KLALETGLNM SKGNQPIPET 701: IDENLKKDLQ EVAQAEADIA KLEHKVDDLE NRLGHHDGKA SGSTHSASKE SRKLPEHNAK MKEKQKDTEA ASTHISERST SKDGQGAARE NETEKQQDSR 801: SKSSQQETSR GSSKLVGLSK RSGTKGEGST TTTSALSKLT MRLNFLKERR SQIANELQNM DKGKTLGQPS PTSGQNRVSE ETEKGSGSNQ DPDSSKLQSP 901: HILDRGRSEN GGDRGRGSSG GNHPNTTPRT FSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)