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AT4G24560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin-specific protease 16
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation.
Computational
Description (TAIR10)
ubiquitin-specific protease 16 (UBP16); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: cell proliferation, flower development, shoot development, root development, leaf development; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 17 (TAIR:AT5G65450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G24560-MONOMERBioGrid:13847EC:3.4.19.12eggNOG:ENOG410XQ92eggNOG:KOG1865EMBL:AF302666EMBL:AL035356
EMBL:AL161561EMBL:CP002687EnsemblPlants:AT4G24560EnsemblPlants:AT4G24560.1entrez:828558GeneID:828558Genevisible:Q9SB51
GO:GO:0006511GO:GO:0008283GO:GO:0009651GO:GO:0009908GO:GO:0016021GO:GO:0016579GO:GO:0036459
GO:GO:0046872GO:GO:0048364GO:GO:0048366GO:GO:0048367GO:GO:1901000Gramene:AT4G24560.1hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF503HOGENOM:HOG000242869InParanoid:Q9SB51IntAct:Q9SB51InterPro:IPR001394InterPro:IPR002893InterPro:IPR018200
InterPro:IPR028889iPTMnet:Q9SB51KEGG:ath:AT4G24560KO:K11855MEROPS:C19.A07ncoils:CoilOMA:GHKEECH
PaxDb:Q9SB51Pfam:PF00443Pfam:PF01753Pfam:Q9SB51Pfscan:PS50235Pfscan:PS50865PhylomeDB:Q9SB51
PIR:T05578PRIDE:Q9SB51PRO:PR:Q9SB51PROSITE:PS00972PROSITE:PS01360PROSITE:PS50235PROSITE:PS50865
ProteinModelPortal:Q9SB51Proteomes:UP000006548RefSeq:NP_567705.1scanprosite:PS00972SMR:Q9SB51STRING:3702.AT4G24560.1SUPFAM:SSF144232
SUPFAM:SSF54001TAIR:AT4G24560tair10-symbols:UBP16TMHMM:TMhelixUniGene:At.2551UniProt:Q9SB51
Coordinates (TAIR10) chr4:-:12679493..12684528
Molecular Weight (calculated) 110606.00 Da
IEP (calculated) 7.13
GRAVY (calculated) -0.46
Length 1008 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)