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AT4G24510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22930748 (2012): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HXXXD-type acyl-transferase family protein
Curator
Summary (TAIR10)
Involved in C28 to C30 fatty acid elongation.
Computational
Description (TAIR10)
ECERIFERUM 2 (CER2); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: wax biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G13840.1); Has 1252 Blast hits to 1252 proteins in 85 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 10; Plants - 1240; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:13842eggNOG:ENOG410IF4TeggNOG:ENOG410YCVDEMBL:AL035356EMBL:AL161561EMBL:AY087262EMBL:BT026481
EMBL:CP002687EMBL:U40849EMBL:X93080EnsemblPlants:AT4G24510EnsemblPlants:AT4G24510.1entrez:828553Gene3D:3.30.559.10
GeneID:828553Genevisible:Q39048GO:GO:0005634GO:GO:0005783GO:GO:0009555GO:GO:0010025GO:GO:0016747
GO:GO:0042761GO:GO:0071555Gramene:AT4G24510.1hmmpanther:PTHR31642hmmpanther:PTHR31642:SF12HOGENOM:HOG000083809InParanoid:Q39048
InterPro:IPR003480InterPro:IPR023213iPTMnet:Q39048KEGG:ath:AT4G24510OMA:QFTWFKCPaxDb:Q39048Pfam:PF02458
Pfam:Q39048PhylomeDB:Q39048PIR:T05583PRIDE:Q39048PRO:PR:Q39048ProteinModelPortal:Q39048Proteomes:UP000006548
RefSeq:NP_194182.1SMR:Q39048STRING:3702.AT4G24510.1TAIR:AT4G24510tair10-symbols:CER2tair10-symbols:VC-2tair10-symbols:VC2
UniGene:At.24827UniProt:Q39048
Coordinates (TAIR10) chr4:+:12660929..12662537
Molecular Weight (calculated) 47240.70 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.11
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGSPVTSVR LSSVVPASVV GENKPRQLTP MDLAMKLHYV RAVYFFKGAR DFTVADVKNT MFTLQSLLQS YHHVSGRIRM SDNDNDTSAA AIPYIRCNDS
101: GIRVVEANVE EFTVEKWLEL DDRSIDHRFL VYDHVLGPDL TFSPLVFLQI TQFKCGGLCI GLSWAHILGD VFSASTFMKT LGQLVSGHAP TKPVYPKTPE
201: LTSHARNDGE AISIEKIDSV GEYWLLTNKC KMGRHIFNFS LNHIDSLMAK YTTRDQPFSE VDILYALIWK SLLNIRGETN TNVITICDRK KSSTCWNEDL
301: VISVVEKNDE MVGISELAAL IAGEKREENG AIKRMIEQDK GSSDFFTYGA NLTFVNLDEI DMYELEINGG KPDFVNYTIH GVGDKGVVLV FPKQNFARIV
401: SVVMPEEDLA KLKEEVTNMI I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)