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AT4G24430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.964
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rhamnogalacturonate lyase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 287 Blast hits to 273 proteins in 60 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 83; Plants - 162; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
CAZy:PL4eggNOG:ENOG410JS5QeggNOG:ENOG410YE12EMBL:AL078637EMBL:AL161561EMBL:CP002687EnsemblPlants:AT4G24430
EnsemblPlants:AT4G24430.1entrez:828545Gene3D:2.60.120.260Gene3D:2.60.40.1120GeneID:828545GO:GO:0005774GO:GO:0005975
GO:GO:0016829GO:GO:0030246Gramene:AT4G24430.1hmmpanther:PTHR32018hmmpanther:PTHR32018:SF4HOGENOM:HOG000243636InterPro:IPR008979
InterPro:IPR010325InterPro:IPR011013InterPro:IPR013784InterPro:IPR014766InterPro:IPR029411InterPro:IPR029413KEGG:ath:AT4G24430
KO:K18195OMA:PISLAMFPfam:PF06045Pfam:PF14683Pfam:PF14686PhylomeDB:Q9STV1PIR:T09906
Proteomes:UP000006548RefSeq:NP_567703.4SUPFAM:SSF49452SUPFAM:SSF49785SUPFAM:SSF74650TAIR:AT4G24430UniGene:At.26232
UniProt:Q9STV1
Coordinates (TAIR10) chr4:+:12630018..12632975
Molecular Weight (calculated) 73612.60 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.47
Length 646 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNQDSVQLD VQESHVVMGN GKVKVTISKP DGFVTGISYQ GVDNLLETHN EDFNRGYWDL VWSDEGTPGT TGKSERIKGT SFEVVVENEE LVEISFSRKW
101: DSSLQDSIAP INVDKRFIMR KDVTGFYSYA IFEHLAEWPA FNLPQTRIVY KLRKDKFKYM AIADNRQRKM PLPEDRLGKR GRPLAYPEAV LLVHPVEDEF
201: KGEVDDKYEY SSENKDLKVH GWISHNLDLG CWQIIPSNEF RSGGLSKQNL TSHVGPISLA MFLSAHYAGE DMVMKVKAGD SWKKVFGPVF TYLNCLPDKT
301: SDPLSLWQDA KNQMLTEVQS WPYDFPASED FPVSDKRGCI SGRLLVCDKF LSDDFLPANG AFVGLAPPGE VGSWQLESKG YQFWTEADSD GYFAINDIRE
401: GEYNLNGYVT GWIGDYQYEQ LINITAGCDI DVGNIVYEPP RDGPTVWEIG IPDRSAAEFF VPDPNPKYIN KLYIGHPDRF RQYGLWERYT ELYPKEDLVF
501: TIGVSDYKKD WFFAHVTRKM GDDTYQKTTW QIKFKLENVQ KSCTYKIRIA LATANVAELQ VRMNDDDTEK TTPIFTTGVI GHDNAIARHG IHGIYRLYNV
601: DVPSEKLVEG DNTLFLTQTM TTTGAFNGLM YDYIRLEGPP LDSYSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)