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AT4G24390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.674
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: auxin F-box protein 5 (TAIR:AT5G49980.1); Has 1708 Blast hits to 1373 proteins in 117 species: Archae - 0; Bacteria - 2; Metazoa - 531; Fungi - 30; Plants - 1073; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
BioGrid:13830eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AK316873EMBL:AL078637EMBL:AL161561EMBL:AY091772
EMBL:BT006340EMBL:CP002687EnsemblPlants:AT4G24390EnsemblPlants:AT4G24390.1EnsemblPlants:AT4G24390.2entrez:828541Gene3D:3.80.10.10
GeneID:828541Genevisible:Q8RWQ8GO:GO:0000822GO:GO:0005634GO:GO:0009734GO:GO:0010011GO:GO:0016567
GO:GO:0019005Gramene:AT4G24390.1Gramene:AT4G24390.2hmmpanther:PTHR24006hmmpanther:PTHR24006:SF430HOGENOM:HOG000239805InParanoid:Q8RWQ8
IntAct:Q8RWQ8InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT4G24390OMA:CLERICLPaxDb:Q8RWQ8Pfam:Q8RWQ8
PhylomeDB:Q8RWQ8PIR:T09902PRIDE:Q8RWQ8PRO:PR:Q8RWQ8ProteinModelPortal:Q8RWQ8Proteomes:UP000006548RefSeq:NP_567702.2
RefSeq:NP_974607.1SMART:SM00367SMR:Q8RWQ8STRING:3702.AT4G24390.1SUPFAM:SSF52047TAIR:AT4G24390UniGene:At.32351
UniGene:At.66636UniPathway:UPA00143UniProt:Q8RWQ8
Coordinates (TAIR10) chr4:-:12613909..12615966
Molecular Weight (calculated) 69503.30 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.15
Length 623 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEEDSSAKM SEDVEKYLNL NPPCSSSSSS SSAATFTNKS RNFKSSPPPC PDHVLENVLE NVLQFLTSRC DRNAVSLVCR SWYRVEAQTR LEVFIGNCYS
101: LSPARLIHRF KRVRSLVLKG KPRFADFNLM PPNWGAQFSP WVAATAKAYP WLEKVHLKRM FVTDDDLALL AESFPGFKEL TLVCCEGFGT SGIAIVANKC
201: RQLKVLDLME SEVTDDELDW ISCFPEGETH LESLSFDCVE SPINFKALEE LVVRSPFLKK LRTNRFVSLE ELHRLMVRAP QLTSLGTGSF SPDNVPQGEQ
301: QPDYAAAFRA CKSIVCLSGF REFRPEYLLA ISSVCANLTS LNFSYANISP HMLKPIISNC HNIRVFWALD SIRDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSGVGL QAISEGCRKL ESILYFCQNM TNGAVTAMSE NCPQLTVFRL CIMGRHRPDH VTGKPMDDGF GAIVKNCKKL TRLAVSGLLT DEAFSYIGEY
501: GKLIRTLSVA FAGNSDKALR YVLEGCPKLQ KLEIRDSPFG DVGLRSGMHR YSNMRFVWLS SCLISRGGCR GVSHALPNVV VEVFGADGDD DEDTVTGDYV
601: ETLYLYRSLD GPRKDAPKFV TIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)